PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015889551.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 123aa MW: 13833.6 Da PI: 5.7241 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.5 | 8.3e-07 | 91 | 116 | 2 | 26 |
T--SS--HHHHHHHHHHHHH.SSS-- CS Homeobox 2 rkRttftkeqleeLeelFek.nryps 26 r+R+t+t+ ql++Le+ F + n +ps XP_015889551.1 91 RQRWTPTPMQLQILEQIFDQgNGTPS 116 89*****************9899998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.8E-4 | 91 | 116 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 123 aa Download sequence Send to blast |
MIGWEKQQQE EQERRDNGGN VNGNGVLYVK VMTDEQLETL RKQIAVYATI CEQLVEMHKN 60 LTAQQDLAGV RLGNLYSDPF MTSAGHKITA RQRWTPTPMQ LQILEQIFDQ GNGTPSLLAS 120 SGK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015889551.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889551.1 | 5e-88 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 5e-50 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A251NDA4 | 1e-61 | A0A251NDA4_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5VTE5 | 4e-62 | M5VTE5_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ04609 | 7e-63 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-51 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|