PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889430.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 231aa    MW: 25653.2 Da    PI: 7.373
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.83e-23184231148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr
  XP_015889430.1 184 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSR 231
                     6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-25178231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.615182231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-22183231IPR004333Transcription factor, SBP-box
PfamPF031108.5E-17185231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLEYEWGNPS SIMLSADEHE PASGSDPIRH HNILEHYANA QNAFSDSFLP PPQHSNNPTA  60
SFAHHFNPHQ VQVSQGQGHH HNHNHNHHAL SLYDPRAYAA TSSYAPPQPL SMLSLDSVTG  120
GGGHGGQAFM LVPKSEEVCR PVDFASRIGL NLGGRTYFSS EDDFMNRLYR RQRPVEPGSS  180
NSPRCQAEGC NADLSHAKHY HRRHKVCEFH SKASTVIAAG LTQRFCQQCS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-17177231357squamosa promoter binding protein-like 4
1wj0_A1e-17185231652squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889429.11e-173squamosa promoter-binding-like protein 8
RefseqXP_015889430.11e-173squamosa promoter-binding-like protein 8
RefseqXP_024931908.11e-173squamosa promoter-binding-like protein 8
SwissprotQ8GXL36e-58SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2P5C9P44e-91A0A2P5C9P4_TREOI; SBP-box transcription factor
STRINGEOX963641e-88(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.26e-62squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]