PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 750aa MW: 81768.1 Da PI: 5.5697 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 331.8 | 1.3e-101 | 392 | 748 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +++L ++Ae +++g+ laq +Larl+++ +sp g+p+qR+a+yf+eAL++ l+ ++ + l+ s+ s + ++ a+k fse+sP+l+f++ XP_015889409.1 392 IDQLSKAAELIETGNPVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQTLLHM---NTTNPLALSPFS---LIFKIGAYKSFSEISPVLQFAN 480 789************************998************************9...555555555555...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +t+NqaIleaveg +rvH+iDfd+++G+QWp+++q+La R++g++sl+iT+++s++ +++ e t+e+L++fA+e+++ fe++++ + ++ + XP_015889409.1 481 FTCNQAILEAVEGFNRVHVIDFDVGYGGQWPSFMQELALRNGGSASLKITAFVSSSMQDEFEFGFTQENLKHFASEINLAFEIEII-SLEVLNSA 574 ******************************************************9999***************************6.44455555 PP GRAS 191 leeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 + L +v++ Ea+aVnl + ++ + ++sl+ vL++vk+lsPk+vv ++ +++ + sF +++++al++ys l++sl+a + ++ + XP_015889409.1 575 SWPLpfNVSESEAIAVNLPIGSFSSY--PLSLPL----VLRFVKQLSPKIVVSLDRGCERMDVSFSHQIIHALNTYSGLLESLDAV-NVNLDALQ 662 6666448888**********999888..777777....*********************************************665.3566999* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 k+Er ll++ i++vv+ ++++ e+ Wr + ++GF+p+++s+++++qa++l+++++++g+++e ++ slvl+W++++L+s+SaW XP_015889409.1 663 KIERYLLQPGIEKVVMGRHRS----PERTPPWRTVFLTSGFSPLTFSNFTESQADCLVQRTPVRGFHIERKQSSLVLCWQRKELISASAW 748 ****************99998....9999************************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.658 | 365 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-99 | 392 | 748 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MKAMPLPFEE FQGKGVLDFS PASDSLLASQ QQQQQQPQKW KTTEQENCYV GSEPTSVLDT 60 RRSPSPPTSS STLSSSLGSG GGGGNGGGSG STDTTGVAAV AVSGNPSSRA APLEEEKCGL 120 GMEDWESVLS ESPGQDQSIL RLIMADVEDP SLGLNKLLQS GSGSQDMEFN TGFGVVDQGY 180 GFEPNSGNLV NNNNIIDPSL QATSCSDFPF NPTPNNVHSN NARLSPLGSV SNPSPSPIFS 240 ASANNPLPVS LAPVVFHQQQ HPQLVEGGDE KPQIFNPQVV INQHQAQFAQ NPALFMPLTY 300 AQLQEHHLLS PPPAKRLNSG NTGANYQLQR VQFPNSGQEL FVRGQQQQLQ LLPQHLHHQQ 360 RPTMAATKQK MVGPAAAGGD ELMNHQLQQA MIDQLSKAAE LIETGNPVLA QGILARLNHQ 420 LSSPIGKPFQ RAAFYFKEAL QTLLHMNTTN PLALSPFSLI FKIGAYKSFS EISPVLQFAN 480 FTCNQAILEA VEGFNRVHVI DFDVGYGGQW PSFMQELALR NGGSASLKIT AFVSSSMQDE 540 FEFGFTQENL KHFASEINLA FEIEIISLEV LNSASWPLPF NVSESEAIAV NLPIGSFSSY 600 PLSLPLVLRF VKQLSPKIVV SLDRGCERMD VSFSHQIIHA LNTYSGLLES LDAVNVNLDA 660 LQKIERYLLQ PGIEKVVMGR HRSPERTPPW RTVFLTSGFS PLTFSNFTES QADCLVQRTP 720 VRGFHIERKQ SSLVLCWQRK ELISASAWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-33 | 397 | 749 | 25 | 379 | Protein SCARECROW |
5b3h_A | 2e-33 | 397 | 749 | 24 | 378 | Protein SCARECROW |
5b3h_D | 2e-33 | 397 | 749 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 88 | SGGGGGNGGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681924 | 1e-41 | LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047. | |||
GenBank | LN713265 | 1e-41 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889409.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A2P5EBN0 | 0.0 | A0A2P5EBN0_TREOI; GRAS transcription factor | ||||
STRING | EOX96296 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3183 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-158 | GRAS family protein |