PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889269.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRF

Protein Properties

Length: 403aa MW: 45947.6 Da PI: 9.2257

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.6e-25	77	120	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e XP_015889269.1 77 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120 79***************************************987 PP
2	QLQ	59.6	9.1e-21	9	44	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ i++ XP_015889269.1 9 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFSIKR 44 8*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-12	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.81	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-15	9	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.156	77	121	IPR014977	WRC domain
Pfam	PF08879	7.3E-21	78	120	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF SIKRSYLDSA MPSKLFPHHP 60 QHIGWNCFQM GMGRKIDPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GKNRSRKPVE 120 VLKTTTSTSS TNSMISNPSL TPTNISSITK NLSAALTPTS RSSISSFSSL PSYNSHHIDH 180 PFLYNHSSSS SSSSSRHPGF GLSPQHHDTS TTSLLLDSGS YSQTHNADYS RRNRYAYGMK 240 EEVDHEHVFF SEEPSGNVRR FSGGSSSSSL DDQSSWKLTP LTMSCSSSKQ RNCSGLQNEQ 300 YSNYLQLQSR HKQDHHYQQQ QNYSSYVFNG NDTEMERKEE TQNRTMHRFF DEWPVKDKDS 360 WLDLDDKSSN SGSISTTRLS ISMPTSSSHE FPIFTSRTGN HGF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF SIKRSYLDSA MPSKLFPHHP  60
QHIGWNCFQM GMGRKIDPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GKNRSRKPVE  120
VLKTTTSTSS TNSMISNPSL TPTNISSITK NLSAALTPTS RSSISSFSSL PSYNSHHIDH  180
PFLYNHSSSS SSSSSRHPGF GLSPQHHDTS TTSLLLDSGS YSQTHNADYS RRNRYAYGMK  240
EEVDHEHVFF SEEPSGNVRR FSGGSSSSSL DDQSSWKLTP LTMSCSSSKQ RNCSGLQNEQ  300
YSNYLQLQSR HKQDHHYQQQ QNYSSYVFNG NDTEMERKEE TQNRTMHRFF DEWPVKDKDS  360
WLDLDDKSSN SGSISTTRLS ISMPTSSSHE FPIFTSRTGN HGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009846	4e-52	AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024932189.1	0.0	growth-regulating factor 5-like isoform X7
TrEMBL	A0A2P5BXX4	1e-156	A0A2P5BXX4_PARAD; Growth-regulating factor
STRING	Gorai.009G035200.1	1e-148	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-57	growth-regulating factor 5