PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889267.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRF

Protein Properties

Length: 409aa MW: 46456.3 Da PI: 9.2257

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.8e-25	84	127	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e XP_015889267.1 84 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 127 79***************************************987 PP
2	QLQ	59.6	9.3e-21	9	44	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ i++ XP_015889267.1 9 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFSIKR 44 8*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-12	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.81	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-15	9	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.156	84	128	IPR014977	WRC domain
Pfam	PF08879	7.5E-21	85	127	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF SIKRSYLDSA MPSKLFPHHP 60 QHRVVPVGAV GWNCFQMGMG RKIDPEPGRC RRTDGKKWRC SKEAFPDSKY CERHMHRGKN 120 RSRKPVEVLK TTTSTSSTNS MISNPSLTPT NISSITKNLS AALTPTSRSS ISSFSSLPSY 180 NSHHIDHPFL YNHSSSSSSS SSRHPGFGLS PQHHDTSTTS LLLDSGSYSQ THNADYSRNR 240 YAYGMKEEVD HEHVFFSEEP SGNVRRFSGG SSSSSLDDQS SWKLTPLTMS CSSSKQRNCS 300 GLQNEQYSNY LQLQSRHKQD HHYQQQQNYS SYVFNGNDTE MERKEETQNR TMHRFFDEWP 360 VKDKDSWLDL DDKSSNSGSI STTRLSISMP TSSSHEFPIF TSRTGNHGF

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF SIKRSYLDSA MPSKLFPHHP  60
QHRVVPVGAV GWNCFQMGMG RKIDPEPGRC RRTDGKKWRC SKEAFPDSKY CERHMHRGKN  120
RSRKPVEVLK TTTSTSSTNS MISNPSLTPT NISSITKNLS AALTPTSRSS ISSFSSLPSY  180
NSHHIDHPFL YNHSSSSSSS SSRHPGFGLS PQHHDTSTTS LLLDSGSYSQ THNADYSRNR  240
YAYGMKEEVD HEHVFFSEEP SGNVRRFSGG SSSSSLDDQS SWKLTPLTMS CSSSKQRNCS  300
GLQNEQYSNY LQLQSRHKQD HHYQQQQNYS SYVFNGNDTE MERKEETQNR TMHRFFDEWP  360
VKDKDSWLDL DDKSSNSGSI STTRLSISMP TSSSHEFPIF TSRTGNHGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889267.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009846	4e-52	AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889267.2	0.0	growth-regulating factor 5-like isoform X2
TrEMBL	A0A2P5BXX4	1e-153	A0A2P5BXX4_PARAD; Growth-regulating factor
STRING	Gorai.009G035200.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4043	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-56	growth-regulating factor 5