PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015889252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 486aa MW: 54406.1 Da PI: 5.1631 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.5 | 2.9e-35 | 146 | 237 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d+e++ ++sw++ +sf+v+d++ef+k++LpkyFkh nf+SF+RQLn+YgFkkv+ ++ weF+++ F++gkk+ll++ XP_015889252.1 146 FLNKTFQMVDDRETDPIVSWNQGRDSFIVWDSHEFSKHLLPKYFKHCNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFRRGKKHLLKN 231 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_015889252.1 232 IKRRSR 237 ***985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.1E-38 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-58 | 142 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.44E-34 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.1E-17 | 146 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-31 | 146 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-17 | 184 | 196 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 185 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-17 | 197 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MAAVRDASGF AGGSGGGDGG ACCSPLSPIQ LPEPIKEMEK ARKKENERPK EVVVSVEEEK 60 EEEKMVVKLN CGDGVGSSSS SSPTEEKAAE EAVVQIKEET VELVDDHVDR LGEPDVGSGS 120 GSCSSSSSLV LPKPIEGLHE VGPPPFLNKT FQMVDDRETD PIVSWNQGRD SFIVWDSHEF 180 SKHLLPKYFK HCNFSSFIRQ LNTYGFKKVD PDRWEFANEG FRRGKKHLLK NIKRRSRYSK 240 QQGGAIACVD SGKDGLESEV ETLNQDHNTL KIEILKLKQL QEDSHSQISA VEERIRCAEC 300 KQHQMFLFLI KTAKNPTFIH QLIQKRIQKK ELDGVEISKR RRLLSNPYPE SLAEGIETTQ 360 SVSNKKKFHE EKLPKQSVGT QNFAEPIFTN PTETVFSVLM DNESCSCIQD QKAKEMRGTG 420 NGPDMSSVYN VMSENLLGDY SIFDEESAVN DSVFYHELED LIAKPRDWGG YFGSLVEQTD 480 CVWSTP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-21 | 144 | 235 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 144 | 235 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 144 | 235 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 228 | 234 | LKNIKRR |
2 | 338 | 342 | KRRRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015889252.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889252.1 | 0.0 | heat shock factor protein HSF30-like | ||||
Refseq | XP_015889253.1 | 0.0 | heat shock factor protein HSF30-like | ||||
TrEMBL | W9QJR8 | 1e-169 | W9QJR8_9ROSA; Heat stress transcription factor A-2 | ||||
STRING | XP_010090068.1 | 1e-170 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26150.1 | 3e-84 | heat shock transcription factor A2 |