PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 857aa    MW: 93879.2 Da    PI: 6.4543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06431450626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     Cr+f++ G C+ Gd+CkF+H+
  XP_015889237.1 431 CRHFLK-GRCQEGDKCKFSHD 450
                     ******.*************7 PP

2zf-CCCH18.82.8e-06484504525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++fa +G C++Gd C F+H
  XP_015889237.1 484 PCSNFASMGSCNRGDDCMFSH 504
                     7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-6425450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079425452IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4426451IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4429450IPR000571Zinc finger, CCCH-type
SMARTSM003560.25454480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.343454478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122479507IPR000571Zinc finger, CCCH-type
SMARTSM003560.091482506IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5483507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4484505IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4484504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MELGIQASHG ATELDLRFDD TVSQYGMTGS TQTAIDHIEH MMNKEENEDV LNRINATVKE  60
STFGIGLEDL GFSREQILIH ELEHIAKGND DLVHENSLKP STALLDQNES DIDEVKMLNN  120
QEEHIDFQRN VITKSENASQ NICGSFDSHL GSTLAAESSN PRASYEVKTK LLDNTLPITQ  180
QNDREMENTV SEGGSDKYPS LNAEVGEIEE GEHHNHEASE TIDMSLDKNI FAEASKCSNN  240
HDPQSFSPEA NAMIIEHEML TKDEEPKTSD CKSDAADSAN YMTEDEDIEE GEISVDCGVD  300
ANSMDMVLQN AEVLEDKKVY EQHTSRGLVD YKELHSIAAN EKDFPSACFL LDTVNNTSKG  360
VEPRESNSNK MVNMQKDAEL QNKKKRGPPS KEKKAKKKKR DRKKRADKNR QLGVKRLKLV  420
PMSKPKTPTF CRHFLKGRCQ EGDKCKFSHD TIPLTKSKPC CHFARHSCMK GDDCPFDHQL  480
SKYPCSNFAS MGSCNRGDDC MFSHKIPHKE DTANASNVMK PELKSTSLLD NSRSKEKLIS  540
NGASQKNYNA LCHSKEIHSR VYNKQNTKDA VSKQSEAAPK GTSFLSVQNS LLVDSSKLRQ  600
GSLFGNNSAG AKAGNHIHQN ASIQNSSEIL HKTPPAVPPK GINFLSFGKV PSGNSNSKKL  660
ASLPLCGDGV KRSVSDNSNL HDHDCSTSNS CLMPNGSQHS VAPKGINFLS IGKASVNDSG  720
CKEKSSLPYG RDNGTDSCVK DEQTALDKPQ SSSTISLAER SPSCPVSSVQ FSGNLASRIY  780
KDTPLSAQKA LLSTLAFAAK CESGVKPNQS VDAPAVNAET LNETRSNNGN SGSSQNDTGK  840
ATKILEFLSR FGCKTQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383404KKRGPPSKEKKAKKKKRDRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889235.10.0uncharacterized protein LOC107424062 isoform X2
RefseqXP_015889237.10.0zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_024932237.10.0uncharacterized protein LOC107424062 isoform X3