PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889237.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 857aa MW: 93879.2 Da PI: 6.4543 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 431 | 450 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+f++ G C+ Gd+CkF+H+ XP_015889237.1 431 CRHFLK-GRCQEGDKCKFSHD 450 ******.*************7 PP | |||||||
2 | zf-CCCH | 18.8 | 2.8e-06 | 484 | 504 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++fa +G C++Gd C F+H XP_015889237.1 484 PCSNFASMGSCNRGDDCMFSH 504 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.27E-6 | 425 | 450 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.079 | 425 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-4 | 426 | 451 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 429 | 450 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.25 | 454 | 480 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.343 | 454 | 478 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.122 | 479 | 507 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.091 | 482 | 506 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-5 | 483 | 507 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-4 | 484 | 505 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 484 | 504 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MELGIQASHG ATELDLRFDD TVSQYGMTGS TQTAIDHIEH MMNKEENEDV LNRINATVKE 60 STFGIGLEDL GFSREQILIH ELEHIAKGND DLVHENSLKP STALLDQNES DIDEVKMLNN 120 QEEHIDFQRN VITKSENASQ NICGSFDSHL GSTLAAESSN PRASYEVKTK LLDNTLPITQ 180 QNDREMENTV SEGGSDKYPS LNAEVGEIEE GEHHNHEASE TIDMSLDKNI FAEASKCSNN 240 HDPQSFSPEA NAMIIEHEML TKDEEPKTSD CKSDAADSAN YMTEDEDIEE GEISVDCGVD 300 ANSMDMVLQN AEVLEDKKVY EQHTSRGLVD YKELHSIAAN EKDFPSACFL LDTVNNTSKG 360 VEPRESNSNK MVNMQKDAEL QNKKKRGPPS KEKKAKKKKR DRKKRADKNR QLGVKRLKLV 420 PMSKPKTPTF CRHFLKGRCQ EGDKCKFSHD TIPLTKSKPC CHFARHSCMK GDDCPFDHQL 480 SKYPCSNFAS MGSCNRGDDC MFSHKIPHKE DTANASNVMK PELKSTSLLD NSRSKEKLIS 540 NGASQKNYNA LCHSKEIHSR VYNKQNTKDA VSKQSEAAPK GTSFLSVQNS LLVDSSKLRQ 600 GSLFGNNSAG AKAGNHIHQN ASIQNSSEIL HKTPPAVPPK GINFLSFGKV PSGNSNSKKL 660 ASLPLCGDGV KRSVSDNSNL HDHDCSTSNS CLMPNGSQHS VAPKGINFLS IGKASVNDSG 720 CKEKSSLPYG RDNGTDSCVK DEQTALDKPQ SSSTISLAER SPSCPVSSVQ FSGNLASRIY 780 KDTPLSAQKA LLSTLAFAAK CESGVKPNQS VDAPAVNAET LNETRSNNGN SGSSQNDTGK 840 ATKILEFLSR FGCKTQQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 383 | 404 | KKRGPPSKEKKAKKKKRDRKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889237.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889235.1 | 0.0 | uncharacterized protein LOC107424062 isoform X2 | ||||
Refseq | XP_015889237.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_024932237.1 | 0.0 | uncharacterized protein LOC107424062 isoform X3 |