PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889235.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 944aa    MW: 103831 Da    PI: 6.3871
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06518537626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     Cr+f++ G C+ Gd+CkF+H+
  XP_015889235.1 518 CRHFLK-GRCQEGDKCKFSHD 537
                     ******.*************7 PP
2zf-CCCH18.73.1e-06571591525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++fa +G C++Gd C F+H
  XP_015889235.1 571 PCSNFASMGSCNRGDDCMFSH 591
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.079512539IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6513537IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4513538IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4516537IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.343541565IPR000571Zinc finger, CCCH-type
SMARTSM003560.25541567IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122566594IPR000571Zinc finger, CCCH-type
SMARTSM003560.091569593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5570594IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4571592IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4571591IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MEETQIETPK PSKQCFSFPP PRRRQLNSAT YRTLVRILSH CYDELSQQSL AAPNLRHELI  60
TDSGSNESGK RDVKEESEHV ELVVTDNMEL GIQASHGATE LDLRFDDTVS QYGMTGSTQT  120
AIDHIEHMMN KEENEDVLNR INATVKESTF GIGLEDLGFS REQILIHELE HIAKGNDDLV  180
HENSLKPSTA LLDQNESDID EVKMLNNQEE HIDFQRNVIT KSENASQNIC GSFDSHLGST  240
LAAESSNPRA SYEVKTKLLD NTLPITQQND REMENTVSEG GSDKYPSLNA EVGEIEEGEH  300
HNHEASETID MSLDKNIFAE ASKCSNNHDP QSFSPEANAM IIEHEMLTKD EEPKTSDCKS  360
DAADSANYMT EDEDIEEGEI SVDCGVDANS MDMVLQNAEV LEDKKVYEQH TSRGLVDYKE  420
LHSIAANEKD FPSACFLLDT VNNTSKGVEP RESNSNKMVN MQKDAELQNK KKRGPPSKEK  480
KAKKKKRDRK KRADKNRQLG VKRLKLVPMS KPKTPTFCRH FLKGRCQEGD KCKFSHDTIP  540
LTKSKPCCHF ARHSCMKGDD CPFDHQLSKY PCSNFASMGS CNRGDDCMFS HKIPHKEDTA  600
NASNVMKPEL KSTSLLDNSR SKEKLISNGA SQKNYNALCH SKEIHSRVYN KQNTKDAVSK  660
QSEAAPKGTS FLSVQNSLLV DSSKLRQGSL FGNNSAGAKA GNHIHQNASI QNSSEILHKT  720
PPAVPPKGIN FLSFGKVPSG NSNSKKLASL PLCGDGVKRS VSDNSNLHDH DCSTSNSCLM  780
PNGSQHSVAP KGINFLSIGK ASVNDSGCKE KSSLPYGRDN GTDSCVKDEQ TALDKPQSSS  840
TISLAERSPS CPVSSVQFSG NLASRIYKDT PLSAQKALLS TLAFAAKCES GVKPNQSVDA  900
PAVNAETLNE TRSNNGNSGS SQNDTGKATK ILEFLSRFGC KTQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470491KKRGPPSKEKKAKKKKRDRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889235.10.0uncharacterized protein LOC107424062 isoform X2
RefseqXP_024932237.10.0uncharacterized protein LOC107424062 isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323