PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 125aa MW: 14110.3 Da PI: 10.0291 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.3 | 1.8e-22 | 71 | 118 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + enksn+qv fsk r+g++KKA ELSvLCdaeva i+fs+++k++ + XP_015889232.1 71 KLENKSNKQVIFSKHRAGLFKKAGELSVLCDAEVAAIVFSPNNKVFCF 118 679*****************************************9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.810.10 | 5.1E-7 | 19 | 77 | IPR009069 | Cysteine alpha-hairpin motif superfamily |
SuperFamily | SSF47072 | 8.63E-11 | 19 | 72 | IPR009069 | Cysteine alpha-hairpin motif superfamily |
Pfam | PF06747 | 6.4E-7 | 21 | 55 | IPR010625 | CHCH |
PROSITE profile | PS50066 | 24.165 | 62 | 122 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-26 | 62 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-21 | 64 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-23 | 64 | 118 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-22 | 72 | 118 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-21 | 84 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-21 | 99 | 120 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MASKPSTPPY PSATRISGSP CYPQYSASLK CLEEYQSDKS KCQEHFDIYK ECKKKETTKK 60 TQNRQKIETK KLENKSNKQV IFSKHRAGLF KKAGELSVLC DAEVAAIVFS PNNKVFCFGI 120 RAPKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889046.1 | 1e-87 | agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_015889232.1 | 1e-87 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q9FKK2 | 3e-18 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2I4EIL4 | 2e-27 | A0A2I4EIL4_JUGRE; cytochrome c oxidase-assembly factor COX23, mitochondrial |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-19 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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