PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889200.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 402aa    MW: 44343.4 Da    PI: 6.7721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G+Ck  d+C FaHg
  XP_015889200.1 141 ACPDFRK-GHCKKADSCEFAHG 161
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0888125IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4136162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4140163IPR000571Zinc finger, CCCH-type
SMARTSM0035614171194IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559171195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMLGEPHRPN PTVHVPPWLT LDDDDMYPPP TLSPFPLSGV SVNSDANVSG DYPPYYLQEA  60
LTALQRYLPC NDTDLDSDSS ERGESDAPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKADSCEFAH GVFECWLHPA RYRTQPCKDG  180
TSCRRRVCFF AHTPDQLRVL PNHQHSPNSN SNSKDSYDGS PLRQAAAFEA KSSLSLSFLS  240
SPSSVSPPAT PTPPAESPPL SPMTQSLSRS LGSSSINEVV LSLRNLQLGK VKSLPSSWNA  300
QNQMGSPGFG SPRGSLLRPG FCSLPSTPTT QALTRAGNGI GPNIDLWDLG CEEEPAMERV  360
ESGRDLRTRM FEKLSKDNSL ERVDAGPSGS APDVDWVSEL VK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889200.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-140C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLW9QLG30.0W9QLG3_9ROSA; Zinc finger CCCH domain-containing protein 49
STRINGXP_010086901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-123C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]