PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889091.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 296aa    MW: 33462.6 Da    PI: 7.8493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-0672861226
                    TS--TTTTT-SS-SS CS
         zf-CCCH 12 tGtCkyGdrCkFaHg 26
                    +G C++G++C+F H+
  XP_015889091.1 72 SGSCPRGEKCHFQHD 86
                    79************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0246087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4466088IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-56390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-56487IPR000571Zinc finger, CCCH-type
SMARTSM003560.4192119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.12292120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-497119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.428.107.8E-7136219IPR011146HIT-like domain
PfamPF046772.5E-29136222IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541972.32E-9142216IPR011146HIT-like domain
PfamPF056236.5E-16242289IPR008507Protein of unknown function DUF789
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSAAEISMKS TNTTLSPYSL AQDSQQTVHA EAAERSNASV SDSQYWRYDV SQKRQKHGAG  60
DGHKLCFKHV SSGSCPRGEK CHFQHDMDAR DQYLKGVCFD FINKGKCERG PDCNFKHSFQ  120
KEGDTFSTRR RLSENATNNR SKECWFCLSS PNVESHLIIS VGENIYCALA KGPLVQDHVL  180
VIPVEHLSNT FSLPPECEID LGRFQDSLKK YYNEQGKEVV FFFSCRVLLR TTMRGLRTCG  240
IEFQPYFTLN DLRESSKEWS AYGAGVPIVL DKSDSVVQYY VPYLSGTQLS GKIINK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932243.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932244.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932245.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932246.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932247.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932248.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932249.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
RefseqXP_024932250.11e-173zinc finger CCCH domain-containing protein 64-like isoform X1
SwissprotQ84WU92e-83C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2P5BIU71e-119A0A2P5BIU7_TREOI; Cwf19-like protein
STRINGXP_010090049.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923