PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 28035.6 Da PI: 6.7843 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++r+kC ++C lapyfpa++ ++f+n+ +lFG+sn++k+++++++++r++a++s+++e++ r +dPv+G++gv ++l++++ + +++l+ XP_015889088.1 10 ACASCKHQRKKCDDNCELAPYFPASRFREFQNAYRLFGVSNIQKIMASVEPHQRQAAAESILMEGNYRRNDPVNGCLGVCRNLNSHIISYEKQLK 104 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l XP_015889088.1 105 IVNQQL 110 999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.245 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-33 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSKESGVYQA CASCKHQRKK CDDNCELAPY FPASRFREFQ NAYRLFGVSN IQKIMASVEP 60 HQRQAAAESI LMEGNYRRND PVNGCLGVCR NLNSHIISYE KQLKIVNQQL AMFRQREKFD 120 RHQNHLSNSY ISSMPSISSE KSSSLNLHRD HQFDALKFPP PLLSDMARDD YMGDAKNLQQ 180 AGYIYRSTLE EGADLKPFDI QLMDQIMESD EHGSVLETEE LSAGLKAHGK QLLQGMRTED 240 EMKYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-21 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-21 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889088.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889088.1 | 0.0 | LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 3e-34 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2N9EC89 | 1e-80 | A0A2N9EC89_FAGSY; Uncharacterized protein | ||||
STRING | XP_006475549.1 | 7e-67 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-36 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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