PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888957.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 444aa MW: 50679.1 Da PI: 6.0022

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.2	1.5e-44	11	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p+GfrF+Pt++el++++Lk k+ g++ +++++i evd++k+ePw+Lp + +k+++ ew+fF++rd ky+++kr nratk+gyWk tgk+++++ XP_015888957.1 11 MPVGFRFRPTEKELITHFLKLKMLGENSKVQDFIGEVDVCKFEPWELPaQsVLKSDDPEWFFFCRRDYKYTNSKRCNRATKAGYWKVTGKERQIK 105 699*************************9************96446667778*********************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127 s +++l+g k+tLvf+kgr+p+ e t+Wv+hey XP_015888957.1 106 SPaTKALIGKKRTLVFHKGRNPS-EGTNWVIHEYY 139 977788************9.89******5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-47	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	47.81	11	158	IPR003441	NAC domain
Pfam	PF02365	4.6E-23	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MNRSSTVLES MPVGFRFRPT EKELITHFLK LKMLGENSKV QDFIGEVDVC KFEPWELPAQ 60 SVLKSDDPEW FFFCRRDYKY TNSKRCNRAT KAGYWKVTGK ERQIKSPATK ALIGKKRTLV 120 FHKGRNPSEG TNWVIHEYYS VETFPDQIPF VLCRLMEKPD KKKIPNGDDG EPSSHSVACF 180 ENEELHDTIP EMRAYDHSDV NLDSIFRPSQ PPDEYPSAQQ QIDFPFPNGS SYAWNELQLP 240 SEADEPDENP NEFVNSVFVD NDEYFWQDTT HPVFNVSGQS LPFPAHEDHG LRYLRSASSS 300 SSFLNEPAGM EEYLQMEMVR TPSGTSNFDQ FKKDINVPIH NQFSVQNASS VSLTKDLHSI 360 NCLNLATDSI IEKPREPEKP RKLVMPFAVP CKAEKPTALE IPKAPEKPCQ PPRPIELIRT 420 GVTSRRIQVK SEGLPTAESG NKVR

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MNRSSTVLES MPVGFRFRPT EKELITHFLK LKMLGENSKV QDFIGEVDVC KFEPWELPAQ  60
SVLKSDDPEW FFFCRRDYKY TNSKRCNRAT KAGYWKVTGK ERQIKSPATK ALIGKKRTLV  120
FHKGRNPSEG TNWVIHEYYS VETFPDQIPF VLCRLMEKPD KKKIPNGDDG EPSSHSVACF  180
ENEELHDTIP EMRAYDHSDV NLDSIFRPSQ PPDEYPSAQQ QIDFPFPNGS SYAWNELQLP  240
SEADEPDENP NEFVNSVFVD NDEYFWQDTT HPVFNVSGQS LPFPAHEDHG LRYLRSASSS  300
SSFLNEPAGM EEYLQMEMVR TPSGTSNFDQ FKKDINVPIH NQFSVQNASS VSLTKDLHSI  360
NCLNLATDSI IEKPREPEKP RKLVMPFAVP CKAEKPTALE IPKAPEKPCQ PPRPIELIRT  420
GVTSRRIQVK SEGLPTAESG NKVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	10	158	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	10	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	10	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	10	158	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	10	158	19	168	NAC domain-containing protein 19
3swm_B	1e-28	10	158	19	168	NAC domain-containing protein 19
3swm_C	1e-28	10	158	19	168	NAC domain-containing protein 19
3swm_D	1e-28	10	158	19	168	NAC domain-containing protein 19
3swp_A	1e-28	10	158	19	168	NAC domain-containing protein 19
3swp_B	1e-28	10	158	19	168	NAC domain-containing protein 19
3swp_C	1e-28	10	158	19	168	NAC domain-containing protein 19
3swp_D	1e-28	10	158	19	168	NAC domain-containing protein 19
4dul_A	1e-28	10	158	16	165	NAC domain-containing protein 19
4dul_B	1e-28	10	158	16	165	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888957.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888956.1	0.0	protein NTM1-like 9 isoform X1
Refseq	XP_015888957.1	0.0	protein NTM1-like 9 isoform X2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	9e-59	NAC transcription factor-like 9