PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888956.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 530aa    MW: 60210.9 Da    PI: 6.0163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.72.1e-44111391127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +p+GfrF+Pt++el++++Lk k+ g++ +++++i evd++k+ePw+Lp +  +k+++ ew+fF++rd ky+++kr nratk+gyWk tgk+++++
  XP_015888956.1  11 MPVGFRFRPTEKELITHFLKLKMLGENSKVQDFIGEVDVCKFEPWELPaQsVLKSDDPEWFFFCRRDYKYTNSKRCNRATKAGYWKVTGKERQIK 105
                     699***************************9****************96446667778************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     s  +++l+g k+tLvf+kgr+p+ e t+Wv+hey 
  XP_015888956.1 106 SPaTKALIGKKRTLVFHKGRNPS-EGTNWVIHEYY 139
                     *977788***************9.89********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-466158IPR003441NAC domain
PROSITE profilePS5100547.8111158IPR003441NAC domain
PfamPF023656.3E-2312138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MNRSSTVLES MPVGFRFRPT EKELITHFLK LKMLGENSKV QDFIGEVDVC KFEPWELPAQ  60
SVLKSDDPEW FFFCRRDYKY TNSKRCNRAT KAGYWKVTGK ERQIKSPATK ALIGKKRTLV  120
FHKGRNPSEG TNWVIHEYYS VETFPDQIPF VLCRLMEKPD KKKIPNGDDG EPSSHSVACF  180
ENEELHDTIP EMRAYDHSDV NLDSIFRPSQ PPDEYPSAQQ QIDFPFPNGS SYAWNELQLP  240
SEADEPDENP NEFVNSVFVD NDEYFWQDTT HPVFNVSGQS LPFPAHEDHG LRYLRSASSS  300
SSFLNEPAGM EEYLQMEMVR TPSGTSNFDQ FKKDINVPIH NQFSVQNASS VSLTKDLHSI  360
NCLNLATDSI IEKPREPEKP RKLVMPFAVP CKAEKPTALE IPKAPEKPCQ PPRPIELIRT  420
GVTSRRIQVK SEGLPTAESG NKVREAAAQN TAANLSQKEE RDPGRKDERK TVQDKAACDV  480
SPCGNWKSFF VFVEPPCKSS PPAVYFFSAL IGVLLFAVFV REAFLFGNWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-281015816165NO APICAL MERISTEM PROTEIN
1ut4_B3e-281015816165NO APICAL MERISTEM PROTEIN
1ut7_A3e-281015816165NO APICAL MERISTEM PROTEIN
1ut7_B3e-281015816165NO APICAL MERISTEM PROTEIN
3swm_A3e-281015819168NAC domain-containing protein 19
3swm_B3e-281015819168NAC domain-containing protein 19
3swm_C3e-281015819168NAC domain-containing protein 19
3swm_D3e-281015819168NAC domain-containing protein 19
3swp_A3e-281015819168NAC domain-containing protein 19
3swp_B3e-281015819168NAC domain-containing protein 19
3swp_C3e-281015819168NAC domain-containing protein 19
3swp_D3e-281015819168NAC domain-containing protein 19
4dul_A3e-281015816165NAC domain-containing protein 19
4dul_B3e-281015816165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888956.10.0protein NTM1-like 9 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-58NAC transcription factor-like 9