PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888934.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 519aa MW: 56564.5 Da PI: 6.568

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.4e-12	296	341	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq XP_015888934.1 296 HSIAERVRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 341 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	289	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-12	289	345	No hit	No description
PROSITE profile	PS50888	17.136	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-17	293	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-9	296	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MDDYLDHLLY SSSWPDEDVK ERSPWVCSES VRPNGMALNS VGVDEDDNNS PKSMINSNHS 60 TGSMAAQDAS SAVLGSESDQ YGIDKGLQYS AEAQFQDDGQ NCYTNTTNGA LHGSLEVGTL 120 GRQYKMGIPK PSSPNHGLPE NMPRPSIPCT GPGFFQWDNA VPQPCFQRFH KDFRTTLCPI 180 PLGPVPSYVG MSSMPLSMGQ DRNIGGFGLP GGYVDNNLFV MEGNSRNLSQ SVTSKVKHDL 240 HNYTLPAFAS GPQTTLETAG IMQSVPQTAL SASPGECNGS GKPRVRARRG QATDPHSIAE 300 RVRREKIAER MKNLQELVPN SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGAAGAVVP 360 LITDCHAEAA NGLSLMPSSG QVLPDVPPSD KTSFEREVMK LMESNVRMAM QYLQSKGLCL 420 MPIALASAIS SGQESSSSPF SENWKTKNRF VDCLVHNKNN STGHSLSGSE IHHNSSNGNY 480 VIDKLNRDSN MISKCNEAAI KPQEMNYSYC TARELKPKI

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MDDYLDHLLY SSSWPDEDVK ERSPWVCSES VRPNGMALNS VGVDEDDNNS PKSMINSNHS  60
TGSMAAQDAS SAVLGSESDQ YGIDKGLQYS AEAQFQDDGQ NCYTNTTNGA LHGSLEVGTL  120
GRQYKMGIPK PSSPNHGLPE NMPRPSIPCT GPGFFQWDNA VPQPCFQRFH KDFRTTLCPI  180
PLGPVPSYVG MSSMPLSMGQ DRNIGGFGLP GGYVDNNLFV MEGNSRNLSQ SVTSKVKHDL  240
HNYTLPAFAS GPQTTLETAG IMQSVPQTAL SASPGECNGS GKPRVRARRG QATDPHSIAE  300
RVRREKIAER MKNLQELVPN SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGAAGAVVP  360
LITDCHAEAA NGLSLMPSSG QVLPDVPPSD KTSFEREVMK LMESNVRMAM QYLQSKGLCL  420
MPIALASAIS SGQESSSSPF SENWKTKNRF VDCLVHNKNN STGHSLSGSE IHHNSSNGNY  480
VIDKLNRDSN MISKCNEAAI KPQEMNYSYC TARELKPKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888934.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888932.1	0.0	uncharacterized protein LOC107423811
Refseq	XP_015888933.1	0.0	uncharacterized protein LOC107423811
TrEMBL	F6HGZ7	1e-151	F6HGZ7_VITVI; Uncharacterized protein
STRING	VIT_11s0016g00380.t01	1e-152	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	7e-57	LJRHL1-like 3