PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 519aa MW: 56564.5 Da PI: 6.568 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.4e-12 | 296 | 341 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq XP_015888932.1 296 HSIAERVRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 341 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-17 | 289 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-12 | 289 | 345 | No hit | No description |
PROSITE profile | PS50888 | 17.136 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-17 | 293 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-9 | 296 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MDDYLDHLLY SSSWPDEDVK ERSPWVCSES VRPNGMALNS VGVDEDDNNS PKSMINSNHS 60 TGSMAAQDAS SAVLGSESDQ YGIDKGLQYS AEAQFQDDGQ NCYTNTTNGA LHGSLEVGTL 120 GRQYKMGIPK PSSPNHGLPE NMPRPSIPCT GPGFFQWDNA VPQPCFQRFH KDFRTTLCPI 180 PLGPVPSYVG MSSMPLSMGQ DRNIGGFGLP GGYVDNNLFV MEGNSRNLSQ SVTSKVKHDL 240 HNYTLPAFAS GPQTTLETAG IMQSVPQTAL SASPGECNGS GKPRVRARRG QATDPHSIAE 300 RVRREKIAER MKNLQELVPN SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGAAGAVVP 360 LITDCHAEAA NGLSLMPSSG QVLPDVPPSD KTSFEREVMK LMESNVRMAM QYLQSKGLCL 420 MPIALASAIS SGQESSSSPF SENWKTKNRF VDCLVHNKNN STGHSLSGSE IHHNSSNGNY 480 VIDKLNRDSN MISKCNEAAI KPQEMNYSYC TARELKPKI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888932.1 | 0.0 | uncharacterized protein LOC107423811 | ||||
Refseq | XP_015888933.1 | 0.0 | uncharacterized protein LOC107423811 | ||||
TrEMBL | F6HGZ7 | 1e-151 | F6HGZ7_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g00380.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15061 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 7e-57 | LJRHL1-like 3 |