PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888823.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 404aa    MW: 43486.1 Da    PI: 10.7078
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-2493137145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v++++k+C  H+hrgr+rsrk++e+
  XP_015888823.1  93 DPEPGRCRRTDGKKWRCSRNVVPDQKYCVQHMHRGRQRSRKPVEA 137
                     79****************************************986 PP
2WRC66.82.9e-21290329241
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 
                      epgrCrRtDGKkWRCsr+v++++k+C rH+hrg +++ k
  XP_015888823.1 290 LEPGRCRRTDGKKWRCSRNVIPDQKYCGRHMHRGAKKRVK 329
                     59********************************999877 PP
3QLQ45.22.8e-162258137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s FTaaQl +L+ Q  + K+L+a++PvP +L+++i+k
  XP_015888823.1 22 SGFTAAQLKELEGQTRIHKHLVAGLPVPFHLVLPIWK 58
                    56*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-72258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.9262358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.2E-102457IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.85793137IPR014977WRC domain
PfamPF088794.1E-2194136IPR014977WRC domain
PROSITE profilePS5166721.412289333IPR014977WRC domain
PfamPF088796.1E-19291329IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTNMRGVGNG GRVKAVIKQG NSGFTAAQLK ELEGQTRIHK HLVAGLPVPF HLVLPIWKSV  60
ATTYGTSQGA IYKHYPSFVG FSPQGFDYRN MIDPEPGRCR RTDGKKWRCS RNVVPDQKYC  120
VQHMHRGRQR SRKPVEAPEI ASPSSDTLPN NSKVELQSST LPTSVGLQLM TRSSGNTDSY  180
YGSKKTVSCT SGAISPIAAM ATNITTPATA VTTNAATTTA AFMSTTNNQT IGNSGNGNHV  240
GNNWIIRGSS NGIIASRNLS PGLGFSTKSV LRVIGCSNSL CFDRRNGMEL EPGRCRRTDG  300
KKWRCSRNVI PDQKYCGRHM HRGAKKRVKI FQTDTDAAAS AATSNIPWLP PATAITCRTV  360
RAIPNTNLSI SIPGSPEKSN SSTSSDTTLS DTSITAYAVS SNVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888822.10.0growth-regulating factor 2 isoform X1
RefseqXP_015888823.10.0growth-regulating factor 2 isoform X2
TrEMBLW9RE941e-127W9RE94_9ROSA; Uncharacterized protein
STRINGXP_010092861.11e-127(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.19e-31growth-regulating factor 3