PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888822.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 443aa    MW: 47621.6 Da    PI: 10.5196
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24132176145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v++++k+C  H+hrgr+rsrk++e+
  XP_015888822.1 132 DPEPGRCRRTDGKKWRCSRNVVPDQKYCVQHMHRGRQRSRKPVEA 176
                     79****************************************986 PP
2WRC66.63.3e-21329368241
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 
                      epgrCrRtDGKkWRCsr+v++++k+C rH+hrg +++ k
  XP_015888822.1 329 LEPGRCRRTDGKKWRCSRNVIPDQKYCGRHMHRGAKKRVK 368
                     59********************************999877 PP
3QLQ45.13.2e-166197137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s FTaaQl +L+ Q  + K+L+a++PvP +L+++i+k
  XP_015888822.1 61 SGFTAAQLKELEGQTRIHKHLVAGLPVPFHLVLPIWK 97
                    56*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-76197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.9266297IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-106396IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.857132176IPR014977WRC domain
PfamPF088794.6E-21133175IPR014977WRC domain
PROSITE profilePS5166721.412328372IPR014977WRC domain
PfamPF088796.8E-19330368IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDIQGSGGGG PQKNNDDKPW SVVKKGEKDN PVKEELSPSM TNMRGVGNGG RVKAVIKQGN  60
SGFTAAQLKE LEGQTRIHKH LVAGLPVPFH LVLPIWKSVA TTYGTSQGAI YKHYPSFVGF  120
SPQGFDYRNM IDPEPGRCRR TDGKKWRCSR NVVPDQKYCV QHMHRGRQRS RKPVEAPEIA  180
SPSSDTLPNN SKVELQSSTL PTSVGLQLMT RSSGNTDSYY GSKKTVSCTS GAISPIAAMA  240
TNITTPATAV TTNAATTTAA FMSTTNNQTI GNSGNGNHVG NNWIIRGSSN GIIASRNLSP  300
GLGFSTKSVL RVIGCSNSLC FDRRNGMELE PGRCRRTDGK KWRCSRNVIP DQKYCGRHMH  360
RGAKKRVKIF QTDTDAAASA ATSNIPWLPP ATAITCRTVR AIPNTNLSIS IPGSPEKSNS  420
STSSDTTLSD TSITAYAVSS NVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888822.10.0growth-regulating factor 2 isoform X1
TrEMBLW9RE941e-129W9RE94_9ROSA; Uncharacterized protein
STRINGXP_010092861.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.11e-30growth-regulating factor 3