PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888766.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 694aa    MW: 77721.1 Da    PI: 6.5616
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122222198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_015888766.1 122 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 212
                     99****************************9543..445569************************************************..348 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_015888766.1 213 NGELRVGVRR 222
                     9999****98 PP
2Auxin_resp105.56.3e-35248327183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+s+F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++S+WrsLk
  XP_015888766.1 248 ASHAVLTQSPFIVYYKPRT--SQFIIGLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDVSS-QWSDSRWRSLK 327
                     6899**************6..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-40113251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-40116237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-20120222No hitNo description
PROSITE profilePS5086312.125122224IPR003340B3 DNA binding domain
PfamPF023621.7E-21122222IPR003340B3 DNA binding domain
SMARTSM010191.6E-22122224IPR003340B3 DNA binding domain
PfamPF065071.7E-32248327IPR010525Auxin response factor
PfamPF023094.5E-10570665IPR033389AUX/IAA domain
SuperFamilySSF542774.66E-14574656No hitNo description
PROSITE profilePS5174527.202580661IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MIHLLYSIYF CFKGDDLYVE LWKACAGPLV EVPRPGERVF YFPQGHMEQL EASTNQELNQ  60
QIPLFNLPSK ILCRVLNIHF LAEQETDEVY AQITLLPEGD QNEPTRPDPC PPETTRPTVH  120
SFCKILTASD TSTHGGFSVL RKHATECLPP LDMTQATPTQ ELVAKDLHGY EWKFKHIFRG  180
QPRRHLLTTG WSTFVTSKRL VAGDAFVFLR GDNGELRVGV RRLARQQSPL PSSVISSHSM  240
HLGVLATASH AVLTQSPFIV YYKPRTSQFI IGLNKYLEAM NNKFSVGMRF KMRFEGEDSP  300
ERRFTGTIVG VGDVSSQWSD SRWRSLKVQW DEHATIQRPD KVSPWEVEPF VASASLNLPQ  360
PVAKTKRPRP VEIPSSEITT NSAASAIWYH GSTQSADLTQ LGSVTEVQST DSQVVWPMRQ  420
KDISSSNYYS SMVRSECVWP SSPRVNISLN LFPDSTEENK TVSTRSLLSG NASPVLSRPM  480
NGPTHDKEEK GTQSEASVGC WLFGINLTGN SSPSSPPERE HMSSVMVCSS AKGSTTVAAS  540
EADKAQNQDV SKLSMEQKQV ISELTPKEFQ PKNSMVFSSR TRTKVQMQGV AVGRAVDLNT  600
LKGYDDLIDE LEKMFEIKGE LRPPNKWAIV FTDDENDMML VGDDPWIEFC KMVKKIFIFS  660
SEEVKKMSTF KLLASSLECE GTVVSLDSEH RAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1751535017355Auxin response factor 1
4ldw_A1e-1751535017355Auxin response factor 1
4ldw_B1e-1751535017355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365369KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888766.10.0auxin response factor 18 isoform X3
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P5FHL90.0A0A2P5FHL9_TREOI; Auxin response factor
STRINGXP_008233127.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9