PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888765.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 699aa    MW: 77970.1 Da    PI: 6.4688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_015888765.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 217
                     99****************************9543..445569************************************************..348 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_015888765.1 218 NGELRVGVRR 227
                     9999****98 PP
2Auxin_resp105.56.4e-35253332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+s+F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++S+WrsLk
  XP_015888765.1 253 ASHAVLTQSPFIVYYKPRT--SQFIIGLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDVSS-QWSDSRWRSLK 332
                     6899**************6..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-40118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-40121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-20125227No hitNo description
PROSITE profilePS5086312.125127229IPR003340B3 DNA binding domain
SMARTSM010191.6E-22127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127227IPR003340B3 DNA binding domain
PfamPF065071.7E-32253332IPR010525Auxin response factor
PfamPF023093.8E-10575670IPR033389AUX/IAA domain
SuperFamilySSF542774.71E-14579661No hitNo description
PROSITE profilePS5174527.202585666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MAHREGCSTT SNAETGFKGD DLYVELWKAC AGPLVEVPRP GERVFYFPQG HMEQLEASTN  60
QELNQQIPLF NLPSKILCRV LNIHFLAEQE TDEVYAQITL LPEGDQNEPT RPDPCPPETT  120
RPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ ATPTQELVAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSPLPSSVI  240
SSHSMHLGVL ATASHAVLTQ SPFIVYYKPR TSQFIIGLNK YLEAMNNKFS VGMRFKMRFE  300
GEDSPERRFT GTIVGVGDVS SQWSDSRWRS LKVQWDEHAT IQRPDKVSPW EVEPFVASAS  360
LNLPQPVAKT KRPRPVEIPS SEITTNSAAS AIWYHGSTQS ADLTQLGSVT EVQSTDSQVV  420
WPMRQKDISS SNYYSSMVRS ECVWPSSPRV NISLNLFPDS TEENKTVSTR SLLSGNASPV  480
LSRPMNGPTH DKEEKGTQSE ASVGCWLFGI NLTGNSSPSS PPEREHMSSV MVCSSAKGST  540
TVAASEADKA QNQDVSKLSM EQKQVISELT PKEFQPKNSM VFSSRTRTKV QMQGVAVGRA  600
VDLNTLKGYD DLIDELEKMF EIKGELRPPN KWAIVFTDDE NDMMLVGDDP WIEFCKMVKK  660
IFIFSSEEVK KMSTFKLLAS SLECEGTVVS LDSEHRAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-176103557355Auxin response factor 1
4ldw_A1e-176103557355Auxin response factor 1
4ldw_B1e-176103557355Auxin response factor 1
4ldx_A1e-176103557355Auxin response factor 1
4ldx_B1e-176103557355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888765.10.0auxin response factor 18 isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P5FHL90.0A0A2P5FHL9_TREOI; Auxin response factor
STRINGXP_008233127.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]