PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888764.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 705aa    MW: 78797.3 Da    PI: 6.5173
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23133233198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_015888764.1 133 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 223
                     99****************************9543..445569************************************************..348 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_015888764.1 224 NGELRVGVRR 233
                     9999****98 PP
2Auxin_resp105.46.4e-35259338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+s+F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++S+WrsLk
  XP_015888764.1 259 ASHAVLTQSPFIVYYKPRT--SQFIIGLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDVSS-QWSDSRWRSLK 338
                     6899**************6..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-40124262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-40127248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-20131233No hitNo description
PfamPF023621.7E-21133233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125133235IPR003340B3 DNA binding domain
SMARTSM010191.6E-22133235IPR003340B3 DNA binding domain
PfamPF065071.7E-32259338IPR010525Auxin response factor
PfamPF023093.5E-10581676IPR033389AUX/IAA domain
SuperFamilySSF542774.76E-14585667No hitNo description
PROSITE profilePS5174527.202591672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRVIVVQDSK SLLVDYDLSL KGFKGDDLYV ELWKACAGPL VEVPRPGERV FYFPQGHMEQ  60
LEASTNQELN QQIPLFNLPS KILCRVLNIH FLAEQETDEV YAQITLLPEG DQNEPTRPDP  120
CPPETTRPTV HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMTQATPT QELVAKDLHG  180
YEWKFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLARQQSP  240
LPSSVISSHS MHLGVLATAS HAVLTQSPFI VYYKPRTSQF IIGLNKYLEA MNNKFSVGMR  300
FKMRFEGEDS PERRFTGTIV GVGDVSSQWS DSRWRSLKVQ WDEHATIQRP DKVSPWEVEP  360
FVASASLNLP QPVAKTKRPR PVEIPSSEIT TNSAASAIWY HGSTQSADLT QLGSVTEVQS  420
TDSQVVWPMR QKDISSSNYY SSMVRSECVW PSSPRVNISL NLFPDSTEEN KTVSTRSLLS  480
GNASPVLSRP MNGPTHDKEE KGTQSEASVG CWLFGINLTG NSSPSSPPER EHMSSVMVCS  540
SAKGSTTVAA SEADKAQNQD VSKLSMEQKQ VISELTPKEF QPKNSMVFSS RTRTKVQMQG  600
VAVGRAVDLN TLKGYDDLID ELEKMFEIKG ELRPPNKWAI VFTDDENDMM LVGDDPWIEF  660
CKMVKKIFIF SSEEVKKMST FKLLASSLEC EGTVVSLDSE HRAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1762236113355Auxin response factor 1
4ldw_A1e-1762236113355Auxin response factor 1
4ldw_B1e-1762236113355Auxin response factor 1
4ldx_A1e-1762236113355Auxin response factor 1
4ldx_B1e-1762236113355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376380KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888764.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888764.10.0auxin response factor 18 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P5FHL90.0A0A2P5FHL9_TREOI; Auxin response factor
STRINGXP_008233127.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9