PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888702.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 327aa MW: 34924.2 Da PI: 8.7505

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	24	82	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk XP_015888702.1 24 PEEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKK 82 6899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	19	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEEINHGSNA CTNKPAVLEK RARPEEQLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR 60 YWTEGGTLRN VPVGGGSRKN KKPITPFSSS SSSSSSAAAA SSKSIPDLNP LSLSRQQFPC 120 LNPRPPPPHY QGQDLNLSFH KYYGGAASAN QYMEVQKSEN DTTTTSSSND NNNNNNLQSN 180 TAASASVPFS SSCSSIELVR SSSGIGSRAG GLNSFIQTTP MMMLDSNAMY PSGFYLQEVK 240 PTTTTTPFGF CVDGLGLGSR YGGVQENNSN NNGGGGSGSG SGSGRILFPF ADFKQVSTNA 300 ASDVDHQNKG QGNSSGYWNG LLGGGSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888702.1	0.0	dof zinc finger protein DOF2.5
Refseq	XP_015888703.1	0.0	dof zinc finger protein DOF2.5
TrEMBL	A0A2P6SIQ8	3e-79	A0A2P6SIQ8_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004306645.1	8e-82	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	2e-39	Dof family protein