PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888700.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 325aa    MW: 36722.5 Da    PI: 6.7807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12185210126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_015888700.1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9183215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12185215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-14245312IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139209.6E-9264306No hitNo description
SuperFamilySSF578507.07E-14264308No hitNo description
CDDcd001622.24E-8265306No hitNo description
PROSITE profilePS5008910.689265303IPR001841Zinc finger, RING-type
SMARTSM001845.2E-5265302IPR001841Zinc finger, RING-type
PROSITE patternPS005180280289IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADSDGKPQP EVCSFFRKPS KNKNIRKRTV EEEDDEESKT ESTFLHSQRK APKPDSKLYF  60
SSGPSKASKP TESNAASDTP IFKFESSKEI QVQHDSRATA TLETETEFSK DARAIRERVL  120
RQAEDGLKGK GKGTGDEKVY KGIHGYTDYK AGFRREHTVA SEKAGGAHGP LRASAHIRAS  180
SRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKAGWQL EKEWEEKEKA RRRNSALGGD  240
DSDEAAAEQS DDDDDDDDDE LPFACFICRE PFVDPVVTKC KHYFCEHCAL KHHSKNKKCY  300
VCNQPTLGIF NTAHEIRKKM AAEGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-648132099317RING finger protein 113A
5z58_M3e-648132099317RING finger protein 113A
6ff4_t3e-648132099317RING finger protein 113A
6ff7_t3e-648132099317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888700.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-165C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK450.0W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010103154.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-142C3H family protein