PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888368.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 350aa MW: 40235.9 Da PI: 8.6237

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.4	1.9e-18	10	54	2	46
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien+ r tf kR++g+ KK +ELS+LC+++v+ ii++++++ XP_015888368.1 10 LIENEKSRRLTFQKRKKGLTKKCSELSTLCGIDVCTIIYGPNNHT 54 59****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.3E-22	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.287	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.22E-23	2	101	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.33E-24	2	71	No hit	No description
PRINTS	PR00404	1.5E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-19	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGRGKLKMEL IENEKSRRLT FQKRKKGLTK KCSELSTLCG IDVCTIIYGP NNHTKDPSVE 60 LETWPKDHNE VIRIIQRYQA ATIYKPPKKS SNLSDFYIER KKNIDSKIDK LRKAKYPISD 120 ELITHYCASS GDHQLGLLLR RLDLKIEAVK RMIEFRKHNQ VINYNPHDHV DHLFDQKFVP 180 FNNNNIPQLD QMVRSVPMPQ YVYPNPMIDH NQMRMMMMMN DQAAASGYDH HQNVAAGTSS 240 SSDSVVDYNQ FSLYSNNPLS SGGVTGLFDP TVGMVENYML LNNIGNNSIP SSSTSQYCQQ 300 QQPLQMMPIM QYYPSSMELP GIPSQMNVSD HKGKSHFDEI TDFYLKNEKL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGRGKLKMEL IENEKSRRLT FQKRKKGLTK KCSELSTLCG IDVCTIIYGP NNHTKDPSVE  60
LETWPKDHNE VIRIIQRYQA ATIYKPPKKS SNLSDFYIER KKNIDSKIDK LRKAKYPISD  120
ELITHYCASS GDHQLGLLLR RLDLKIEAVK RMIEFRKHNQ VINYNPHDHV DHLFDQKFVP  180
FNNNNIPQLD QMVRSVPMPQ YVYPNPMIDH NQMRMMMMMN DQAAASGYDH HQNVAAGTSS  240
SSDSVVDYNQ FSLYSNNPLS SGGVTGLFDP TVGMVENYML LNNIGNNSIP SSSTSQYCQQ  300
QQPLQMMPIM QYYPSSMELP GIPSQMNVSD HKGKSHFDEI TDFYLKNEKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888613.1	1e-140	uncharacterized protein LOC107423552

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-20	M-type_MADS family protein