PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888323.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 356aa    MW: 40628.8 Da    PI: 7.4686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-52491731129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+deelv++yL +k+++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++v+  
  XP_015888323.1  49 LPPGFRFHPRDEELVCDYLLNKITDSDSTL---MIEVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRPVHL- 139
                     79************************9666...889************7777799***************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kg+lvg++ktLvfy+grapkg+ktdWvmhe+rle
  XP_015888323.1 140 KGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 173
                     999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6041197IPR003441NAC domain
PROSITE profilePS5100556.3849197IPR003441NAC domain
PfamPF023652.6E-2750172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
YIYNNYKLSN IFSACLSVCV IERERERERE RERERGERVR NISLVEAKLP PGFRFHPRDE  60
ELVCDYLLNK ITDSDSTLMI EVDLNKCEPW DIPETACVGG KEWYFYSQRD RKYATGLRTN  120
RATASGYWKA TGKDRPVHLK GTLVGMRKTL VFYQGRAPKG KKTDWVMHEF RLEAPLATPK  180
LISSDKEDWV LCRVFYKSRE IGPKPSLGSC YGETTGSKCL PPLMDSYISF DHSRAAHQNY  240
IDYHDQYEQV PCFSNIFPYN NNQIINDPIL KNLQAHIDYS NIPNKLAGTT LSSSTNTTGI  300
IPNNDGDNEV LKAVLSHFTK MESNIGQSLK GSPSLGEGSS ESYLSEVGMS NIWSHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-514419712165NO APICAL MERISTEM PROTEIN
1ut4_B7e-514419712165NO APICAL MERISTEM PROTEIN
1ut7_A7e-514419712165NO APICAL MERISTEM PROTEIN
1ut7_B7e-514419712165NO APICAL MERISTEM PROTEIN
3swm_A9e-514419815169NAC domain-containing protein 19
3swm_B9e-514419815169NAC domain-containing protein 19
3swm_C9e-514419815169NAC domain-containing protein 19
3swm_D9e-514419815169NAC domain-containing protein 19
3swp_A9e-514419815169NAC domain-containing protein 19
3swp_B9e-514419815169NAC domain-containing protein 19
3swp_C9e-514419815169NAC domain-containing protein 19
3swp_D9e-514419815169NAC domain-containing protein 19
4dul_A7e-514419712165NAC domain-containing protein 19
4dul_B7e-514419712165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12434RERERERERER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888323.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888323.20.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-112NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLQ93XA71e-144Q93XA7_PHAVU; NAC domain protein NAC1
STRINGXP_007149262.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-103NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]