PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 31826.8 Da PI: 9.7802 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.3 | 7.1e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ XP_015888238.1 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTS 108 79****************************.89***************8888999*************************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_015888238.1 109 nGNHKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 67788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-64 | 8 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.763 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MESTDSSTGS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG NHKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLADGKNSSA TTTKPPDSTP NKKASLRLDD WVLCRIYKKN 180 NSQRPIIDRD KDDAMEAMLM PSMQGQLSVA SSQQNPKPPL SKPANYASLL ENDDSFFEGI 240 LSGDGMQNTS SISHHQFATS SSKSNLAAAV KRPPPQQFWN DVGSIGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-74 | 15 | 182 | 20 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888238.2 | 0.0 | NAC transcription factor 25-like, partial | ||||
Swissprot | Q8GY42 | 1e-112 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A061GMK3 | 1e-141 | A0A061GMK3_THECC; NAC domain containing protein 25 | ||||
STRING | EOY28334 | 1e-141 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-115 | NAC domain containing protein 25 |