PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887868.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 144aa    MW: 16427 Da    PI: 9.0086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-201970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdps +g   r +lg+f+taeeAa+a+++a+ +++g+
  XP_015887868.1 19 RYRGVRRRP-WGKYAAEIRDPSRQG--GRLWLGTFDTAEEAARAYDRAAFNFRGH 70
                    6********.**********96543..9************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-141970IPR001471AP2/ERF domain
SMARTSM003801.3E-371983IPR001471AP2/ERF domain
PROSITE profilePS5103225.0531977IPR001471AP2/ERF domain
CDDcd000184.91E-291978No hitNo description
Gene3DG3DSA:3.30.730.101.1E-311979IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-231978IPR016177DNA-binding domain
PRINTSPR003671.6E-112031IPR001471AP2/ERF domain
PRINTSPR003671.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEDPSRRKDK REEKEEQVRY RGVRRRPWGK YAAEIRDPSR QGGRLWLGTF DTAEEAARAY  60
DRAAFNFRGH LAILNFPNEY YSKLRVSPPH SSFSAGSGSG SGSGSRSFER GGSSAGQERQ  120
VFEFECLDDK VLEDLLDSEE KNKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-321613111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887868.11e-101ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-50ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5BWU82e-58A0A2P5BWU8_PARAD; AP2/ERF transcription factor
STRINGXP_010093427.12e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-39ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]