PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887656.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 269aa    MW: 29347.2 Da    PI: 4.8946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1878127255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_015887656.1  78 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 127
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1378127IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2178136IPR016177DNA-binding domain
SMARTSM003804.0E-3678141IPR001471AP2/ERF domain
PROSITE profilePS5103223.32778135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3278136IPR001471AP2/ERF domain
PRINTSPR003672.2E-107990IPR001471AP2/ERF domain
CDDcd000181.58E-3379137No hitNo description
PRINTSPR003672.2E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEKQINIESD AQENLLCSTS TTTSFSSSSS SSSSTTFNSI PQNNGSSEAQ GIKNIGIHQQ  60
SKKRQGNHEN NNIEKHPTYR GVRMRNWGKW VSEIREPRKK SRIWLGTYPT AEMAARAHDV  120
AALAIKGSSA FLNFPELAHY LPRPVSTSPK DIQAAAAKAA AAAAAAATAF DEGKLCRAEA  180
EVEAEPRQAE LIPLSSSPTS NLSMDNSCTQ ESASSPSSTD YEDALFDLPD LFNDVSDSGD  240
GFCYYYSSSW HLCAADTGLR LEEPFLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17761351272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559283e-33EF155928.1 Populus trichocarpa TINY-like protein (TINYL9) gene, complete cds.
GenBankEF1559293e-33EF155929.1 Populus trichocarpa TINY-like protein (TINYL10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887656.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ73e-69ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2P5EJ481e-101A0A2P5EJ48_TREOI; AP2/ERF domain containing protein
STRINGXP_008232393.11e-93(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]