PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887398.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 213aa    MW: 23753.2 Da    PI: 8.9434
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.51.7e-4288163277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cq+e+C adls+ak+yhrrhkvCe+h kap+v+v+gl qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrr++ 
  XP_015887398.1  88 CQAERCGADLSDAKRYHRRHKVCEFHFKAPAVIVAGLPQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRRTP 163
                     *************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-3484149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94985162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.45E-3887166IPR004333Transcription factor, SBP-box
PfamPF031102.4E-3288161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAGAKKLLY EGAGRQGWKE RAASNRDHED QVLEDDLSDQ EEDQTFGFGG DGGDQSSFAV  60
NDQKKKKPAT GVAATRRGCG GGGGGVGCQA ERCGADLSDA KRYHRRHKVC EFHFKAPAVI  120
VAGLPQRFCQ QCSRFHELSE FDEAKRSCRR RLAGHNERRR RTPAECFGDG SSNRKAASKE  180
REIQTTQTED HRARMQMTPP HGNSTGYKQF YIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3678161184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887398.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922505.11e-157squamosa promoter-binding-like protein 3
RefseqXP_024928820.11e-157squamosa promoter-binding-like protein 3
RefseqXP_024931629.11e-157squamosa promoter-binding-like protein 3 isoform X1
SwissprotQ9S7A93e-41SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A1B3IL683e-53A0A1B3IL68_POPTO; Squamosa promoter-binding protein 20
STRINGXP_009340759.12e-53(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-42squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Hyun Y, et al.
    Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles.
    Planta, 2015. 241(1): p. 271-84
    [PMID:25269397]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Ioannidi E, et al.
    Trichome patterning control involves TTG1 interaction with SPL transcription factors.
    Plant Mol. Biol., 2016. 92(6): p. 675-687
    [PMID:27631431]
  5. Jung JH,Lee HJ,Ryu JY,Park CM
    SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
    Mol Plant, 2016. 9(12): p. 1647-1659
    [PMID:27815142]