PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015887398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 213aa MW: 23753.2 Da PI: 8.9434 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.5 | 1.7e-42 | 88 | 163 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C adls+ak+yhrrhkvCe+h kap+v+v+gl qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrr++ XP_015887398.1 88 CQAERCGADLSDAKRYHRRHKVCEFHFKAPAVIVAGLPQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRRTP 163 *************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-34 | 84 | 149 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.949 | 85 | 162 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.45E-38 | 87 | 166 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-32 | 88 | 161 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEAGAKKLLY EGAGRQGWKE RAASNRDHED QVLEDDLSDQ EEDQTFGFGG DGGDQSSFAV 60 NDQKKKKPAT GVAATRRGCG GGGGGVGCQA ERCGADLSDA KRYHRRHKVC EFHFKAPAVI 120 VAGLPQRFCQ QCSRFHELSE FDEAKRSCRR RLAGHNERRR RTPAECFGDG SSNRKAASKE 180 REIQTTQTED HRARMQMTPP HGNSTGYKQF YIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-36 | 78 | 161 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015887398.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024922505.1 | 1e-157 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024928820.1 | 1e-157 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024931629.1 | 1e-157 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | Q9S7A9 | 3e-41 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A1B3IL68 | 3e-53 | A0A1B3IL68_POPTO; Squamosa promoter-binding protein 20 | ||||
STRING | XP_009340759.1 | 2e-53 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-42 | squamosa promoter binding protein-like 4 |