PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015887235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 270aa MW: 29227.4 Da PI: 7.7585 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.4 | 7.3e-09 | 198 | 238 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++r +r++kNRe+A rsR a++ eLe +v+ L++eN +L+ XP_015887235.1 198 TDRRHKRMIKNRESAARSR----AYTNELELEVAHLQEENARLRR 238 689***************9....7*******************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-8 | 190 | 240 | No hit | No description |
SMART | SM00338 | 2.2E-4 | 196 | 256 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-6 | 198 | 238 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-6 | 200 | 242 | No hit | No description |
CDD | cd14707 | 5.34E-23 | 200 | 255 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MWTSPDGNSN NNTSRLTCSP SDSDSDSDSK SKTKSSSTCS SSSLFSPSSP TPITPSPPSF 60 ADSSNTTRKP MEEVWKDITL ASLHDHHSTS TSTTLQEFLA TPFHKDPSSD PSSCACEISF 120 LGALPPPPAG IMSLNNSGSG FECRFLESNT CAGSLQPTPQ LQTATMAPLV VALDTLRSSS 180 VCPTDSKKRP QENGDNSTDR RHKRMIKNRE SAARSRAYTN ELELEVAHLQ EENARLRRQQ 240 AKAWIANLCL AGPAQLPKKH TLQRTSTAPF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015887235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024924135.1 | 1e-153 | bZIP transcription factor 27-like | ||||
Swissprot | Q84JK2 | 9e-42 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A2I4HKQ2 | 2e-54 | A0A2I4HKQ2_JUGRE; protein FD-like isoform X1 | ||||
STRING | cassava4.1_021412m | 4e-52 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35900.1 | 7e-36 | bZIP family protein |