PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887121.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 363aa    MW: 38884 Da    PI: 8.4807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11296341655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  XP_015887121.1 296 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 341
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-14293356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-11294345No hitNo description
Gene3DG3DSA:4.10.280.101.9E-13295353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MYHSNSPSHS QKPMGPSGLT RYGSAPGSLL ATAVDSVIGG GADREFNTAA LRSPYCFSGD  60
SSSVTSESTC KVNSSPSSSV PPNKEQYQQH HNNKGLHRSY CLNEIASRVG SSSSSSSSSS  120
SSSLVRQKSS PAGLLSHLAA ATTENNAGFS VTRGAGSYSS QGGTNGGHGV SRLKSQLSFT  180
GQDSLSQISE VSENVVDVGS ADNGHQNAMH SYVTNSFGMD SWDNNTNSIV FSAPTSKRAK  240
HMDGDIYNCL NILETQFSLP QTTLEMATVE KLLQIPEDSV PCKIRAKRGC ATHPRSIAER  300
ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVQHIKGL QNQVQNLHKE LENCSCGCKQ  360
QTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887121.10.0transcription factor bHLH128 isoform X1
SwissprotQ8H1021e-100BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A314UI411e-169A0A314UI41_PRUYE; Transcription factor bHLH128
STRINGXP_008380690.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]