PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28417.1 Da PI: 5.2467 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.5 | 3.4e-26 | 80 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ +++ +++ +r+ tr gCka++++ ++ gkw vtk++++HnH+l+ XP_015886995.1 80 NFYYEYAKHTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMIRLAARDGGKWIVTKFVHDHNHKLM 170 6*****************************************9998822333349**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.7E-24 | 80 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTGAASGHDF LDSDGGSDDE TFEKFCEHEA VEDELLPRCS LNNDVNDCLI PKELHVEGLS 60 AESLEPYAGM TFPSLEDARN FYYEYAKHTG FTIRTNRIRH SLKNMAIIGR DFVCSREGFR 120 AAKHTLRKDR VLPPRPITRE GCKAMIRLAA RDGGKWIVTK FVHDHNHKLM TSCKFSGELP 180 IVNILSEEEK DKKIQDLYDE LQHERQRSVA LQHQLSMILE DLEEHAEFMS IRVEDIINSI 240 KEIELGDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886995.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | F6HYS5 | 1e-133 | F6HYS5_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0102g00440.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-43 | FAR1 family protein |