PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886983.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 262aa MW: 30836.5 Da PI: 6.521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.1e-27	89	180	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e++ + ++ +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p XP_015886983.1 89 EFYEMYGRRMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKHANrLNRVLPSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 180 6*******************9****************999934444559********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-24	89	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MWTQLCISSQ HKRFMMASTS DLEFSPNRNY RRWLDETFDG HDTADDELSD TLDGNEDMIQ 60 SSTENFPLTF EPFEPVIGME FQSAENAREF YEMYGRRMGF TIRNNRTRRS LKDNAIIGRE 120 FVCSKEGFRA EKHANRLNRV LPSRPATREG CNAMLRIAAK DGGKWVIYGF VKEHNHELNP 180 SNVPPRRSHR IAFCEDEKDL KIRELSTELH RERKKSAVYQ EKLQMVWRYI EEHTQRLSLK 240 VDVITKNMRE LEAEEQDSSS SD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886983.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024931437.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024931438.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024931439.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024931440.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A5BNB5	1e-148	A5BNB5_VITVI; Uncharacterized protein
TrEMBL	F6HYS2	1e-150	F6HYS2_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00400.t01	1e-151	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-46	FAR1 family protein