PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886820.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 295aa    MW: 31406.8 Da    PI: 7.1694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.2e-111254444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT e d+ + +a + ++ +    W++Ia+ ++ g+tl+++k+++
   XP_015886820.1 12 WTREQDKAFENALATHPEDasdWWEKIAADVP-GKTLEEVKHHY 54
                     ********************************.**********9 PP
2Myb_DNA-binding422.1e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_015886820.1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.599762IPR017884SANT domain
SMARTSM007172.6E-6860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-51063IPR009057Homeodomain-like
SuperFamilySSF466891.73E-101066IPR009057Homeodomain-like
CDDcd001671.38E-81257No hitNo description
PfamPF002495.9E-81254IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.27E-16117172IPR009057Homeodomain-like
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
CDDcd001678.38E-10122167No hitNo description
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTVDEEGSSS LWTREQDKAF ENALATHPED ASDWWEKIAA DVPGKTLEEV KHHYELLAED  60
VKQIESGCVP LPCYNSSSEG STSHAGDEGT GKKGGHTGNY SSESNHGSKT SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN TDISGAQGPI TGQANGSAGG SASKSTKQPP QPPAGPPGVG MYGAPTIGQP  240
VGGPLVSAVG TPVNLPSAPH IAYGVRAPVA GAMVPGAPMN MGPMPYPMPH TTTHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-17777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886818.10.0transcription factor SRM1
RefseqXP_015886819.10.0transcription factor SRM1
RefseqXP_015886820.10.0transcription factor SRM1
SwissprotQ9FNN61e-131SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2I4DKY90.0A0A2I4DKY9_JUGRE; transcription factor DIVARICATA-like
STRINGXP_008366961.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-111MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]