PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886800.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 632aa    MW: 69093.7 Da    PI: 6.7278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-064666526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C+ffa+ G C+ G  C+F+H 
  XP_015886800.1 46 PCKFFAA-GNCRNGKYCRFSHH 66
                    7**9999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161312.3E-71381IPR032297Torus domain
PROSITE profilePS5010314.2494168IPR000571Zinc finger, CCCH-type
SMARTSM003560.00194167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-54366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
FHGATDGFNK GSAEDVSRES ENDRRKGDTS IEQGVDREPR RSNDIPCKFF AAGNCRNGKY  60
CRFSHHIQTS ASPNGKSHHD KWGPANKLDD VDQVWDGPKW SNSVVPDAAM FSEDKNGIIG  120
AQEARSTWSA NDNRWGNSLT DENEKPTVSH EAAKINEKEA LRWKADNAGT SMGFSEPKHA  180
EKWLGDMDMS PDWNYAVQSS NYVVKEDNSH ITRGSESSSR NDISLTTRVQ SMTQDPFGRM  240
HNAATIMRPM IIEKSVIQQN HDLREDGAIA LPYDDKNAVG KIGSIHADTN ISASILAQSF  300
DQNGQHSSAF PLPSLNTIRQ NQPVIPAETH KGILKNPQTM PLSPEVKCLV KPDFGDAKIA  360
VANSGIPSTQ KMVSGEQITQ LTNLSASLAQ LLANGQQLPQ LYATLSTNNA VGVPSFTSAE  420
GSVNPVSSAT QPDQAIGSQK HYDPVHDKTE SMRPDISNKP PGILLNPAAN KSNLPDGKSE  480
RKLMNSTPSP RPGGPDGDDS CEDSEGNNKM GDEKSKKPLE ENRKAQEDGP LEGIDKDGAD  540
DGKKSKDMKG TRAFKFALVE FVKELLKPTW KDGQISKDSY KIIVKKVVDK VTGTLQNANV  600
PQTQEKIDHY LSLSKPKLTK LVQAYVDKSQ KG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024931564.10.0zinc finger CCCH domain-containing protein 38-like
TrEMBLW9QM160.0W9QM16_9ROSA; Zinc finger CCCH domain-containing protein 38
STRINGXP_010090865.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-10C3H family protein