PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015886371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 527aa MW: 58534.2 Da PI: 6.3256 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.8e-07 | 275 | 296 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_015886371.1 275 FCTICGKGFKRDANLRMHMRGH 296 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.25E-5 | 272 | 300 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 274 | 301 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 274 | 296 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 275 | 325 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 276 | 296 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 56 | 323 | 356 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 36 | 361 | 383 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence Send to blast |
MDQEDGLCPD NWANSSPRNE LAKEISSNHP SFSNFNSRQH QKKWEEPSIL DYGIGIESSF 60 QEFNQTSITQ SSLPHDPNNQ NKISDQENAQ IQESFQANKI QDWDPSAMLN NLSFLEQKIH 120 QLQDLVHVIV GRRGQVLGRP DDLMGQQQQL VIADLTSIIA QLISTAGSLL PSVKHSLSAG 180 MPSMGLLGQL GGVSFPPGPG MNSSVPSQNN GGSKFPEQSN QTDLTAKYGA EHNYHIEEHE 240 SKDEEDADES ENLPPGTYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY 300 KTAAALAKPN KESSSEPMLI KRYSCPYAGC KRNKEHKKFQ PLKTILCVKN HYKRTHCDKS 360 YTCSRCHTKK FSVIADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLE 420 ETKGSAMQVD HAIGIEATNK VGVNFNFSSS APDGSMTQNI MDMKGSVDDP TAYFSPLNFD 480 TCNFGGLHEF PRPPFEDTES SFSFLLSGSC NYTQKLGGES SSNNNLE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015886371.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886371.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A251MTM3 | 0.0 | A0A251MTM3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237278.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |