PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886208.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26997.8 Da    PI: 8.783
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.8e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gklye +
  XP_015886208.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSHGKLYELA 58
                    79*********************************************965 PP
2K-box43.61.3e-151492044499
           K-box  44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++sl eLq Le++Le  + +iRs+K+++++++i+ l++ke+ l+ +nk L+ k+e
  XP_015886208.1 149 GTMSLDELQVLEKNLEIWIYHIRSTKMDIMFQEIQLLRNKEEILEAANKHLQDKIE 204
                     589***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-28174IPR002100Transcription factor, MADS-box
CDDcd002654.45E-40278No hitNo description
PRINTSPR004045.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.407116209IPR002487Transcription factor, K-box
PfamPF014861.1E-15141203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS HGKLYELATK  60
GTMQGLIEKY MKSNRGSQLT CQSMETQSLG LTCDLAFKFK IMMIAQFKTI LEGELEQCLW  120
MNCKFLKRIL KFGFIIYAQQ RYTFEGGAGT MSLDELQVLE KNLEIWIYHI RSTKMDIMFQ  180
EIQLLRNKEE ILEAANKHLQ DKIENTDGTL NFVPMMTNHP YPLTIQNEIF EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15174173MEF2C
5f28_B3e-15174173MEF2C
5f28_C3e-15174173MEF2C
5f28_D3e-15174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886208.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886208.11e-173agamous-like MADS-box protein AGL12
SwissprotQ388417e-65AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A0D4ZXW36e-94A0A0D4ZXW3_PYRPY; AGL12-like MADS-box protein
STRINGXP_009362369.13e-94(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-67AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]