PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886186.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 639aa    MW: 72711.6 Da    PI: 9.8368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029527552123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kC    C +sF +k +L+ H r+ +
  XP_015886186.1 527 HKCDleGCRMSFDTKAELTIHKRNrC 552
                     789999****************9877 PP
2zf-C2H2130.00031610636123
                     EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                     y+C+   Cg sF+  s++ rH r+  H
  XP_015886186.1 610 YQCKieGCGLSFRFVSDFSRHRRKtgH 636
                     99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-141555IPR003349JmjN domain
PROSITE profilePS5118313.731657IPR003349JmjN domain
PfamPF023758.5E-151750IPR003349JmjN domain
SMARTSM005588.5E-5299418IPR003347JmjC domain
PROSITE profilePS5118413.09299639IPR003347JmjC domain
SuperFamilySSF511972.2E-9300368No hitNo description
PfamPF023735.2E-13332379IPR003347JmjC domain
Gene3DG3DSA:3.30.160.603.3E-4519549IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035516527549IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217550579IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-6550587No hitNo description
SMARTSM003550.62550574IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5551578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280552574IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-10579604IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016580604IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.946580609IPR007087Zinc finger, C2H2
PROSITE patternPS000280582604IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-10590632No hitNo description
Gene3DG3DSA:3.30.160.602.0E-11605633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.577610639IPR007087Zinc finger, C2H2
SMARTSM003550.19610636IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280612636IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MGNVEIPNWL EGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PLPKPSKRYV  60
FGNLNKSLAK CPDLGADVNS PNFCSSSKMG SFDGDGDSDG EVRAVFTTRH QELGQTVKRT  120
KGVVQSTPLG VHKQVWQSGE IYTLEQFESK SRAFAKSHLG MVKEVSPLVI EAMFWKAASE  180
KPIYIEYAND VPGSAFGEPE GHFRYIRRRR RQRNFYQRSR ESSNRKKNEI VSNRNSIENS  240
ITGDVKDVSP NPENDSEQCL DASKSSTAIS VLSSDETSRS SRQKSQSCCF EKEGTAGWKL  300
SNSPWNLQVI ARSSGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNYLHTG  360
SPKTWYAVRI IATSNKEIKV NRGRTMLQLI IVERKLYHRQ LSQPKNILEV KERTRMMGDL  420
CNASEVCSSQ DDRKLANIKC NTADPKSIMG KKRKREMEQL RENKSSCSSF IRSPCEGLRP  480
RIAKDASSRS GIDYHEEVKE KLATKEKKSS SAPVAAKDKK QNSRKFHKCD LEGCRMSFDT  540
KAELTIHKRN RCPHEGCGKR FSSHKYAMIH HRVHDDERPL KCPWKGCSMS FKWAWARTEH  600
IRVHTGERPY QCKIEGCGLS FRFVSDFSRH RRKTGHYVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-5152763823134Lysine-specific demethylase REF6
6a58_A5e-5152763823134Lysine-specific demethylase REF6
6a59_A5e-5152763823134Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444453PKSIMGKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930884.10.0LOW QUALITY PROTEIN: probable lysine-specific demethylase ELF6
SwissprotQ6BDA01e-147ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A314YJ130.0A0A314YJ13_PRUYE; Putative lysine-specific demethylase ELF6
STRINGVIT_13s0019g04520.t010.0(Vitis vinifera)
STRINGEMJ217820.0(Prunus persica)
STRINGXP_010112224.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]