PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886151.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 173aa    MW: 18846.2 Da    PI: 6.5234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-171664355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ ++g
  XP_015886151.1 16 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHFRG 64
                    9****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-111464IPR001471AP2/ERF domain
SMARTSM003809.7E-361578IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-221573IPR016177DNA-binding domain
PROSITE profilePS5103223.1961572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-311573IPR001471AP2/ERF domain
PRINTSPR003671.5E-121627IPR001471AP2/ERF domain
CDDcd000181.94E-211674No hitNo description
PRINTSPR003671.5E-125474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEDEAHAYSH VAPPAYRGVR KRKWGKWVSE IREPGKKTRI WLGSYEAPEM AAAAYDVAAL  60
HFRGRGARLN FPELVDSLPR PASSMAEDVQ LAAQQAALRF RGPIRVSAAS ATEVSSSGGV  120
NSVPVTVGLS PSQIQAINES PLDSPKMWMQ MAEAFLLGDH SNSTSTVFYD DDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-161677668ATERF1
3gcc_A8e-161677668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886151.11e-125ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I21e-53ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLW6FTF69e-74W6FTF6_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010104523.12e-74(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-45ERF family protein