PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015886058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26481.2 Da PI: 9.5868 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.6e-26 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viif tgkly++ss XP_015886058.1 16 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFTGTGKLYDFSS 65 8***********************************************96 PP | |||||||
2 | K-box | 91.3 | 1.7e-30 | 87 | 176 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+++R+++Ge+L+sLs+k+Lq+Le+qLe sl+ +R kK+++ll++i+el +k + +++en +L kk+ XP_015886058.1 87 NPTSEVKFWQREAAILRQQLQNLQENHRQMMGEELSSLSVKDLQNLENQLEMSLRGVRMKKDQILLDEIQELNRKGDLIHQENVELYKKV 176 567889********************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-37 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.146 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.46E-44 | 8 | 82 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-31 | 8 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-27 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-27 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-27 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-28 | 89 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.797 | 92 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MEIREDMGRG KIVIRRIDNS TSRQVTFSKR RNGLLKKAKE LAILCDAEVG VIIFTGTGKL 60 YDFSSTSMKT VIERYNKAKE EHYQQGNPTS EVKFWQREAA ILRQQLQNLQ ENHRQMMGEE 120 LSSLSVKDLQ NLENQLEMSL RGVRMKKDQI LLDEIQELNR KGDLIHQENV ELYKKVYGTR 180 EMNGPNRNLL LTNSLGMGDD SHGPVHLQLS QPQQNHETPA RATKLGLQLH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-21 | 7 | 87 | 1 | 81 | MEF2C |
5f28_B | 9e-21 | 7 | 87 | 1 | 81 | MEF2C |
5f28_C | 9e-21 | 7 | 87 | 1 | 81 | MEF2C |
5f28_D | 9e-21 | 7 | 87 | 1 | 81 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015886058.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024930995.1 | 1e-165 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | A2RVQ5 | 1e-108 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A1U8PF71 | 1e-137 | A0A1U8PF71_GOSHI; MADS-box transcription factor 23-like isoform X6 | ||||
STRING | XP_006472406.1 | 1e-138 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-110 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|