PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886055.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30557.8 Da    PI: 10.5148
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-261665251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viif  tgkly++ss
  XP_015886055.1 16 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFTGTGKLYDFSS 65
                    8***********************************************96 PP
2K-box67.25.7e-23651293498
           K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + R+++Ge+L+sLs+k+Lq+Le+qLe sl+ +R kK+++ll++i+el +k + +++en +L kk+
  XP_015886055.1  65 STRQMMGEELSSLSVKDLQNLENQLEMSLRGVRMKKDQILLDEIQELNRKGDLIHQENVELYKKV 129
                     57***********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-37766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-26870IPR002100Transcription factor, MADS-box
CDDcd002655.62E-36866No hitNo description
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-27929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241663IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.11918135IPR002487Transcription factor, K-box
PRINTSPR004045.2E-272944IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-274465IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2165129IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEIREDMGRG KIVIRRIDNS TSRQVTFSKR RNGLLKKAKE LAILCDAEVG VIIFTGTGKL  60
YDFSSTRQMM GEELSSLSVK DLQNLENQLE MSLRGVRMKK DQILLDEIQE LNRKGDLIHQ  120
ENVELYKKVY GTREMNGPNR NLLLTNSLGM GDDSHGPVHL QLSQPQQNHE TPARATKLGY  180
NSLHSHIMRI MTTNFLFIIS NLLLKNLDPK LIFLTLQQTT TALMKMQKLL TGITSCLSTK  240
WIMVRNYASI AMMWYKRRKI ISKKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16766160MEF2C
5f28_B2e-16766160MEF2C
5f28_C2e-16766160MEF2C
5f28_D2e-16766160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886055.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872320.11e-144agamous-like MADS-box protein AGL16 isoform X1
SwissprotA2RVQ55e-75AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A1U8PCL95e-94A0A1U8PCL9_GOSHI; MADS-box transcription factor 23-like isoform X4
STRINGXP_006472406.12e-99(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.21e-77AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]