PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 35466.3 Da    PI: 10.5245
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.6e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viif  tgkly++ss
  XP_015886054.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFTGTGKLYDFSS 59
                    8***********************************************96 PP

2K-box90.43.2e-3081170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + +++ + +q+e+a L+++++nLq+++R+++Ge+L+sLs+k+Lq+Le+qLe sl+ +R kK+++ll++i+el +k + +++en +L kk+
  XP_015886054.1  81 NPTSEVKFWQREAAILRQQLQNLQENHRQMMGEELSSLSVKDLQNLENQLEMSLRGVRMKKDQILLDEIQELNRKGDLIHQENVELYKKV 170
                     567889********************************************************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.146161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-31291IPR002100Transcription factor, MADS-box
CDDcd002653.75E-43276No hitNo description
PRINTSPR004047.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.79786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFTG TGKLYDFSST  60
SMKTVIERYN KAKEEHYQQG NPTSEVKFWQ REAAILRQQL QNLQENHRQM MGEELSSLSV  120
KDLQNLENQL EMSLRGVRMK KDQILLDEIQ ELNRKGDLIH QENVELYKKV YGTREMNGPN  180
RNLLLTNSLG MGDDSHGPVH LQLSQPQQNH ETPARATKLG YNSLHSHIMR IMTTNFLFII  240
SNLLLKNLDP KLIFLTLQQT TTALMKMQKL LTGITSCLST KWIMVRNYAS IAMMWYKRRK  300
IISKKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20181181MEF2C
5f28_B7e-20181181MEF2C
5f28_C7e-20181181MEF2C
5f28_D7e-20181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886054.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930994.11e-163MADS-box transcription factor 23 isoform X1
SwissprotA2RVQ51e-108AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A1U8PCL91e-135A0A1U8PCL9_GOSHI; MADS-box transcription factor 23-like isoform X4
STRINGXP_006472406.11e-141(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-111AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]