PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 313aa MW: 36240.1 Da PI: 10.4085 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.5 | 2.6e-26 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viif tgkly++ss XP_015886053.1 16 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFTGTGKLYDFSS 65 8***********************************************96 PP | |||||||
2 | K-box | 90.4 | 3.4e-30 | 87 | 176 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+++R+++Ge+L+sLs+k+Lq+Le+qLe sl+ +R kK+++ll++i+el +k + +++en +L kk+ XP_015886053.1 87 NPTSEVKFWQREAAILRQQLQNLQENHRQMMGEELSSLSVKDLQNLENQLEMSLRGVRMKKDQILLDEIQELNRKGDLIHQENVELYKKV 176 567889********************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-37 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.146 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-31 | 8 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.67E-43 | 8 | 82 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-27 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-27 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-27 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-28 | 89 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.797 | 92 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEIREDMGRG KIVIRRIDNS TSRQVTFSKR RNGLLKKAKE LAILCDAEVG VIIFTGTGKL 60 YDFSSTSMKT VIERYNKAKE EHYQQGNPTS EVKFWQREAA ILRQQLQNLQ ENHRQMMGEE 120 LSSLSVKDLQ NLENQLEMSL RGVRMKKDQI LLDEIQELNR KGDLIHQENV ELYKKVYGTR 180 EMNGPNRNLL LTNSLGMGDD SHGPVHLQLS QPQQNHETPA RATKLGYNSL HSHIMRIMTT 240 NFLFIISNLL LKNLDPKLIF LTLQQTTTAL MKMQKLLTGI TSCLSTKWIM VRNYASIAMM 300 WYKRRKIISK KTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-20 | 7 | 87 | 1 | 81 | MEF2C |
5f28_B | 8e-20 | 7 | 87 | 1 | 81 | MEF2C |
5f28_C | 8e-20 | 7 | 87 | 1 | 81 | MEF2C |
5f28_D | 8e-20 | 7 | 87 | 1 | 81 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886053.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024930994.1 | 1e-163 | MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | A2RVQ5 | 1e-108 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A1U8PCL9 | 1e-135 | A0A1U8PCL9_GOSHI; MADS-box transcription factor 23-like isoform X4 | ||||
STRING | XP_006472406.1 | 1e-141 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-111 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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