PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885965.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 156aa    MW: 17564.7 Da    PI: 5.0581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-181363155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  XP_015885965.1 13 SKYKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYSTPEAAALAHDVAFYCLRR 63
                    89*****998.**********8...3.35********************9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-181373IPR016177DNA-binding domain
PfamPF008471.6E-111362IPR001471AP2/ERF domain
CDDcd000181.23E-261373No hitNo description
Gene3DG3DSA:3.30.730.104.5E-261473IPR001471AP2/ERF domain
SMARTSM003801.2E-281479IPR001471AP2/ERF domain
PROSITE profilePS5103221.4831473IPR001471AP2/ERF domain
PRINTSPR003672.9E-91526IPR001471AP2/ERF domain
PRINTSPR003672.9E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSCSSEEALD VQSKYKGVRR RKWGKWVSEI RVPGTQERLW LGTYSTPEAA ALAHDVAFYC  60
LRRPPTTDNL NFPLMLPPSV HSDMSPRSIQ RAASDAGMAI DAQFISQRHI EEPERRKVQE  120
PGVREDEVCV SSAWWGGNEV RDGEGEALSI SVEDYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885965.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885965.11e-113ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I86e-46ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2N9J3535e-59A0A2N9J353_FAGSY; Uncharacterized protein
STRINGXP_008219092.12e-55(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]