PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885618.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 420aa    MW: 45874.7 Da    PI: 9.845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05191213223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg+ F   +nL+ H+ + H
  XP_015885618.1 191 SCPECGEIFMKAENLELHQAVrH 213
                     8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280190213IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182190218IPR007087Zinc finger, C2H2
SuperFamilySSF563995.37E-24215418No hitNo description
Gene3DG3DSA:3.90.228.107.3E-15217417IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSAMGKTRN QKKPTKQIYQ SQNHPPKKTE KPPSWAVVRG LLTCKHLQTP QLQEQKQQTA  60
TKQKKQQQKE QAAEENAKKC KKMKCSGSLC SNTKVMHRPE TGSPEVHKKR ALVGGSSNSE  120
VSSRSMKAPL NEINGVVSTS SSLSVSSTSS VGGSFRGMPF RRFSGCYECR MVVDPVLGFA  180
RDPSLRGSIC SCPECGEIFM KAENLELHQA VRHAVSELGP EDTSKNIVEI IFQSSWLKKQ  240
VPVCKIDRIL KVHNTQKTIS KFEEYRDSIK AKATKLPKKH PRCIADGNEL LRFHCTTFVC  300
SLGLNGSTNL CNSIPQCNVC SIIKNGFKAA TGEAAGNGIL TTATSGKAHD KAGVAEDGNE  360
KRAMLVCRVI AGRVKKNMEG NIDEYDSVAG AVGVYSNLDE LYVSNPKAIL PCFVVIYGGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885618.10.0uncharacterized protein LOC107421015
TrEMBLA0A2I4H5D60.0A0A2I4H5D6_JUGRE; uncharacterized protein LOC109013663
STRINGXP_008233905.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-103C2H2-like zinc finger protein