PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015885269.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 372aa MW: 41295.5 Da PI: 6.435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015885269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.3e-13	159	210	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ XP_015885269.1 159 QRMTHIVVERNRRKQMNEYLAILRSLMPSS---YVQRGDQASIIGGAINFVKELE 210 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.45E-13	157	214	No hit	No description
SuperFamily	SSF47459	2.22E-16	158	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.135	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-10	159	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-13	159	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-9	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MALETVVYQN PKDPLISYGC SKDFYSLGGS EGGGGGGGGS WDYDICLQEE DKALLLGILD 60 DNHDIDHHQS GHLHANYYWD SSSSPPSALQ TVKDHHQCDI PNSTSSPEAC CSVDQPLPPA 120 FQLPPMETPP LPGTTTTASC RRKRRRTRTS KNKEEIENQR MTHIVVERNR RKQMNEYLAI 180 LRSLMPSSYV QRGDQASIIG GAINFVKELE QFLQSMEGNK NKTTKQQDKS FATTSSPLAE 240 FFTFPQYSTR ATQSGNSVAV VGAPEENETT NIAANQNQRW AAVADIEVTM MDCHANLKIL 300 SKKRPRQLLK MVTGFQALRL TILHLNLTTV DHMVLYTVSV KIEEGCQLST VDEIAAAVNQ 360 MLRKIQEEAA FS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MALETVVYQN PKDPLISYGC SKDFYSLGGS EGGGGGGGGS WDYDICLQEE DKALLLGILD  60
DNHDIDHHQS GHLHANYYWD SSSSPPSALQ TVKDHHQCDI PNSTSSPEAC CSVDQPLPPA  120
FQLPPMETPP LPGTTTTASC RRKRRRTRTS KNKEEIENQR MTHIVVERNR RKQMNEYLAI  180
LRSLMPSSYV QRGDQASIIG GAINFVKELE QFLQSMEGNK NKTTKQQDKS FATTSSPLAE  240
FFTFPQYSTR ATQSGNSVAV VGAPEENETT NIAANQNQRW AAVADIEVTM MDCHANLKIL  300
SKKRPRQLLK MVTGFQALRL TILHLNLTTV DHMVLYTVSV KIEEGCQLST VDEIAAAVNQ  360
MLRKIQEEAA FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	145	RKRRR
2	141	146	RKRRRT
3	159	170	RMTHIVVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015885269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885269.1	0.0	transcription factor bHLH94 isoform X1
TrEMBL	A0A2N9GHH5	1e-136	A0A2N9GHH5_FAGSY; Uncharacterized protein
STRING	EOY15348	1e-129	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-87	bHLH family protein