PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885119.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 614aa    MW: 65892.7 Da    PI: 8.3009
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24220264145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_015885119.1 220 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 264
                     79****************************************985 PP
2QLQ60.74e-21151186237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  XP_015885119.1 151 LFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 186
                     6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.4E-12150186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.347151186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-15152185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663220264IPR014977WRC domain
PfamPF088797.3E-21221263IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MDFGVVGLDG LGGSDTGGFA SSLASDPETK QKWYGSGFHK QERSGASQND WRSSKLAKTD  60
DFSGSKAMLL QQKNALLRSN CTLFSDGQQQ QQMLSFSSPK SESFLLEKTS PNVTLPYFHN  120
TLSAYNRNTG YSSGSLNGSS VHGAITGARG LFTPSQWMEL EHQALIYKYI TANVPIPSNL  180
LIPIRKALES AGFSGYSGGL LRPNTLGWGA FHLGFSNNAD PEPGRCRRTD GKKWRCSRDA  240
VADQKYCERH MNRGRHRSRK PVEGQTGHSA AGATTATTTS KLMPTVSSSS SSVALSGGAA  300
SNSLAIANQQ LHSLQPQPPA AASNSSSAAT AIHVNRMFVK ENAGERMQST PGLSLLSKEN  360
HFLSQKQQQN PFEESSREFG LITSDSFLNS STKTSSSLIS CRNFDSSSHE LTDRVTDSQH  420
SLRQFINEWP KNQSDHRSSV SWSDLDTQSD RTQLSISIPM ASSDFTPSSS SPNNEKLVTL  480
SPLRLSRGLE SVPMSLGVGD EQSNNRQANW IPISWENSLG GPLGEVLNHT NNNNGGGECK  540
NPSVLNLMTE GWDSSPPLGS SPTGVLQKTA FVSLSNSSAG SSPRAENNKT HEGASLCNDL  600
LGSNLVASSS LPAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733684e-59AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885120.10.0growth-regulating factor 1-like isoform X2
RefseqXP_024930715.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A2N9F1V90.0A0A2N9F1V9_FAGSY; Uncharacterized protein
STRINGEOY156570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.19e-65growth-regulating factor 1