PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 692aa MW: 76154.1 Da PI: 6.8859 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 4e-16 | 333 | 392 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_015885105.1 333 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 392 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.8e-14 | 437 | 486 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_015885105.1 437 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 486 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.64E-22 | 333 | 400 | No hit | No description |
Pfam | PF00847 | 9.6E-13 | 333 | 392 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 333 | 402 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-16 | 334 | 401 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-28 | 334 | 406 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 334 | 400 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 335 | 346 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-24 | 435 | 496 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-17 | 435 | 495 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-18 | 436 | 494 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 436 | 500 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 436 | 494 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 437 | 486 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 476 | 496 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MKPMNDHNNN NGNSSNWLGF SLSPHMKMEV TTSDPSHHHH HQYSQAQASS ASATSFYLSP 60 STQHLNNTSP ICYGVGANGN GGFHSPFSVM PLKSDGSLCI MEALSRSQAE GMVPSSSPKL 120 EDFLGGASMG SHQYGSHERE AMALSLDSIY YNNQNAEPEA NRDEHSLDLV QQPYRQQEQQ 180 IHVQSHPYYS GIPCHGIYQT PLEEESKEET TPHISNCDPQ ISQMPEGGLP ALKNWVSRQY 240 SAHHSLEQQM NGNMVDDSGA SGSVGAMNCG DLQSLSLSMS PGSQSSCVTA PRQISPTGTE 300 CVAVETKKRG PGMVGQKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG 360 QTRKGRQVYL GGYDMEEKAA RAYDLAALKY WGPSTHINFP LENYQAELEE MKNMTRQEYV 420 AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 480 AIKFRGVNAV TNFDITRYDV EKIMASSTLL AGELARRNKE MEPSNEAVDY NRSTQSGETN 540 QPDNSNGNGS DWKMVLYPSQ QQQQSNTCGV QTLDQKPINS GNYQNASFSM AIQDLMGIDT 600 VNSNQPLVDE SGKLGTHFSN SSSLVTSLSS SREASPDKNG PAMLFARPPL ASKFIGTPNG 660 GVNTWFPSAA AQLRPAAISM AHLPVFAAWN DT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885105.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885105.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-157 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2I4DTF7 | 0.0 | A0A2I4DTF7_JUGRE; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | EOY15653 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |