PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885103.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 385aa    MW: 42059 Da    PI: 7.6476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08138158526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_015885103.1 138 ACPDFRK-GNCKKGDSCEFAHG 158
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.9E-6132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6133159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051134160IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.056168192IPR000571Zinc finger, CCCH-type
SMARTSM0035612168191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMLGEPTRFN PTVQIPQWDP FEDPTAVMAS PFSSVPNSSV NVNANAGNGD YALFLDSFSS  60
LHRYLPSNEY VASESDSLSE ESDVPVDAFS CDHFRMFEFK VRRCARGRSH DWTEGPIAHP  120
GEKARRRDPR KHHYSGTACP DFRKGNCKKG DSCEFAHGVF ECWLHPARYR TQPCKDGLSC  180
RRRVCFFAHT PEQLRVLPQQ SPRAHGSSCD SYDGSPVRHA FDSYLTKGSF VSSPTSILTS  240
PPVSPPSESP PMSPSGAAQP GGGSATSVSE LALSMRGLQL GKMKMNSPSW GVQMGSGFGS  300
PRGGSTLRPG FCSLPSTPTR TPTNRSGLGA FDLWDQTCEE EPAMERVESG KNLRAKMYAK  360
LSKENSLEQS CASAPDVGWV SELVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885103.10.0zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G21e-117C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P5EKZ20.0A0A2P5EKZ2_TREOI; Zinc finger, CCCH-type
STRINGVIT_04s0008g00610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-105C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]