PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885100.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 382aa    MW: 43558.3 Da    PI: 6.6634
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093103442155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++e+  LA+++gL+++q+ +WF N+R ++
  XP_015885100.1 310 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 344
                     669*****************************885 PP
2ELK37.84e-13264285122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  XP_015885100.1 264 ELKNHLLRKYSGYLSSLKQELS 285
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-21120164IPR005540KNOX1
PfamPF037902.7E-22121162IPR005540KNOX1
SMARTSM012563.3E-29171222IPR005541KNOX2
PfamPF037919.0E-24176220IPR005541KNOX2
PROSITE profilePS5121311.296264284IPR005539ELK domain
PfamPF037892.7E-10264285IPR005539ELK domain
SMARTSM011883.5E-7264285IPR005539ELK domain
PROSITE profilePS5007112.876284347IPR001356Homeobox domain
SuperFamilySSF466891.5E-19285359IPR009057Homeodomain-like
SMARTSM003891.0E-12286351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27289350IPR009057Homeodomain-like
CDDcd000861.43E-11296348No hitNo description
PfamPF059201.5E-16304343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEYNQMDEN TGGSRGNFLY SSAANLGGNY GRTNDGSNVG NHHHHHHQQT QMPISTFHLQ  60
SGGDCFQSSG GGGGGGHPIV KTEASTSQHL QKFHYPLMSR THQTVQHHHH ENDTTANEVE  120
AIKAKIIAHP QYCNLLEAYL DCQKVGAPPE VVARLSAARQ DFEARQRSSV SSRENSKDPE  180
LDQFMEAYYD MLVKYREELT RPIQEAMDFM RRIETQLNML SNSPVRIFGA DDKCEGIGSS  240
EDDQDNSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL KQELSKKKKK GKLPKDARQK  300
LLSWWELHYK WPYPSETEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLH  360
PQNAALYMDG HYMGDGHYRL GP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885100.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A061FMA10.0A0A061FMA1_THECC; KNOTTED-like from
STRINGEOY156240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-150KNOTTED-like from Arabidopsis thaliana